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Table 2 List of 10 genes involved in major processes associated with fruit development and ripening based on Gene Ontology categorization

From: Transcriptome changes during fruit development and ripening of sweet orange (Citrus sinensis)

Go term

Gene identifier

Gene discription

150vs120 Fold change

190vs150 Fold change

220vs190 Fold change

carotenoid

TC14030

Zeta-carotene desaturase

4.94

-

2.19

metabolic

TC15628

Zeta-carotene desaturase

6.59/0

-

2.93

process

TC19375

carotenoid isomerase

3.33

0.19

-

 

TC3

Phytoene desaturase

6.18

-

2.19

 

TC4815

Epsilon lycopene cyclase

3.1

-

-

 

TC5834

Capsanthin/capsorubin synthase

0.35

8.39

0.55

 

CN187831

Zeta-carotene desaturase

-

-

1.2/0

 

EY722043

Phytoene synthase

-

1.36

-

 

TC26011

Zeta-carotene desaturase

-

0/3.43

1.2/0

 

TC5

Lycopene beta-cyclase

-

2.88

-

cell wall

EY676350

Reversibly glycosylated protein

0.13

9.53

1.81

organization

EY727139

Alpha-expansin 3

0/1.19

-

-

 

TC4398

Pectinesterase-3 precursor

0.57

1.43

0.31

 

EY700757

Pectinesterase-1 precursor

-

-

0.26

 

EY743186

Alpha-expansin precursor

-

1.48/0

-

 

TC14614

Pectinesterase PPE8B precursor

-

0.09

0/0.99

 

TC25537

Xyloglucan endotransglucosylase

-

0/1.58

-

 

EY738078

Expansin

-

5.17/0

-

 

EY679620

Cellulose synthase

0.3

0.33

0.2

 

EY679934

Cellulose synthase

0.51

0.23

-

sucrose

TC11046

Sucrose synthase

0.32

0.39

0.41

metabolic

EY743126

Sucrose-phosphate synthase 1

7.65/0

-

1.77

process

TC14378

Sucrose-phosphate synthase 1

3.28

-

2.53

 

TC20096

Sucrose synthase

1.85/0

0/1.85

1.44/0

 

EY719381

Sucrose-phosphate synthase 1

-

-

0.37

 

CX044648

Sucrose synthase

-

0.1875

-

 

EY667747

Sucrose-phosphate synthase

-

-

-

 

EY677217

Sucrose-phosphate synthase

-

-

8.43

oxygen and

EY680864

Superoxide dismutase

5.28/0

-

0.25

reactive

EY741543

Superoxide dismutase [Cu-Zn]

1.78

-

1.69

oxygen

TC12069

Cu/Zn superoxide dismutase

32.18/0

0.62

-

species

TC14743

Cu/Zn-superoxide dismutase copper chaperone precursor

2.71

-

-

 

TC2154

Superoxide dismutase [Cu-Zn]

2.67

0.36

3.72

 

TC22348

Superoxide dismutase

4.22

-

-

 

TC23992

Superoxide dismutase

11.34/0

0.61

2.47

 

CN189455

Superoxide dismutase [Mn], mitochondrial precursor

3.69/0

2.07

-

 

TC4680

Superoxide dismutase

3.55

2.87

1.48

 

TC19068

Cu/Zn-superoxide dismutase copper chaperone precursor

-

-

-

Response

CF836240

Peroxidase precursor

0.31

-

0/3.69

to stress

CK701553

Heat shock protein 70

0.19

-

0.26

 

EY676086

Serine/threonine-protein phosphatase PP1

2.37/0

-

-

 

EY735114

Plastid enolase

4.68

-

2

 

TC18825

2-oxoacid dehydrogenase family protein

3.97

0.54

2.81

 

TC21917

Methionine synthase

2.11/0

-

-

 

TC3575

22 kDa polypeptide

1.12

-

0.92

 

EY730377

Group 5 late embryogenesis abundant protein

-

-

2.03

 

TC20176

Osmotin-like

-

-

0/0.99

 

TC8117

Thaumatin-like protein

-

20.91

3.63

  1. For each gene, the number given at each stage indicates that the level of expression differed significantly compared with the level at the former stage; -, no significant difference; 0, zero detectable expression, for example, 6.59/0 indicates that the expression was not detected at the earlier sampling stage, but showed a transcript level of 6.59 at the current one.