Table 6 Top 12 predicted RNAs, ranked by their RPKM score
| Â | Conserved region in Mtb H37Rv1 | Region in M. Smegmatis3 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
id | start | Orient-ation5 | length | # reads | RPKM | Evo-fold?2 | Genes flanking the intergenic region | Start | Stop | # reads | RPKM | |
RNA14 | 1612987 | --+ | 58 | 1013 | 69526 | Y | Rv1435c (secreted protein) | Rv1436 (GAPDH) | 756567 | 756626 | 100 | 626 |
RNA24 | 1374224 | --- | 46 | 567 | 30071 | Y | Rv1230c (membrane prot.) | Rv1231c (membrane prot.) | - | - | Â | - |
RNA34 | 1393055 | --- | 85 | 111 | 9251 | Y | Rv1248c (sucA) | Rv1249c (membrane prot.) | 5147110 | 5147242 | 173 | 489 |
RNA4 | 483829 | -++ | 49 | 55 | 2139 | Y | Rv0403c (membrane prot. mmpS1) | Rv0404 (fadD30) | - | - | Â | - |
RNA5 | 1200514 | -++ | 93 | 81 | 2055 | Y | Rv1075c (exported protein) | Rv1076 (lipase lipU) | 5363400 | 5363474 | 10 | 50 |
RNA6 | 987053 | -++ | 92 | 174 | 6767 | Y | Rv0887c (cons. Hypo. prot) | Rv0888 (hyp. Exported prot.) | - | - | Â | - |
RNA7 | 1810184 | +++ | 44 | 517 | 9280 | Y | Rv1610 (cons. membrane protein) | Rv1611 (trpC) | 3296996 | 3297034 | 291 | 2804 |
RNA8 | 3587635 | -++ | 56 | 83 | 6917 | N | Rv3210c (cons. hypo. prot.) | Rv3211 (rhlE) | 2009575 | 2009665 | 6 | 25 |
RNA94 | 4224925 | --+ | 41 | 502 | 24405 | N | Rv3778c (aminotransf.) | Rv3779 (membrane prot.) | 6420618 | 6420674 | 36 | 237 |
RNA10 | 659351 | +++ | 39 | 58 | 1829 | Y | Rv0567 (methyltransferase) | Rv0568 (cyp135B1) | - | - | Â | - |
RNA11 | 1794708 | -++ | 48 | 375 | 18231 | Y | Rv1593c (cons. hypo. prot) | Rv1594 (nadA) | 3277552 | 3277599 | 70 | 548 |
RNA12 | 2447526 | --- | 74 | 332 | 9684 | Y | Rv2185c (cons. hypo. prot) | Rv2186c (cons. hypo. prot) | 4335086 | 4335137 | 111 | 802 |