From: MASiVEdb: the Sirevirus Plant Retrotransposon Database
host speciesa | common name | clade | genome size (Mb)b | number of chr. | intact SVs | avg age (my) | withENV |
---|---|---|---|---|---|---|---|
Arabidopsis thaliana | thale cress | eudicot | 116 | 5 | 4 | 0.95 | 2 |
Brachypodium distachyon | brome | monocot | 262 | 5 | 22 | 1.97 | 14 |
Chlamydomonas reinhardtii | n/a | alga | 99 | 17 | 0 | n/a | 0 |
Fragaria vesca | strawberry | eudicot | 203 | 7 | 1 | 0.45 | 0 |
Glycine max | soybean | eudicot | 915 | 20 | 1337 | 0.45 | 1294 |
Lotus japonicus | lotus | eudicot | 291 | 7 | 282 | 0.35 | 270 |
Oryza sativa indica | rice | monocot | 362 | 12 | 25 | 2.18 | 14 |
Oryza sativa japonica | rice | monocot | 370 | 12 | 91 | 1.29 | 42 |
Ostreococcus lucimarinus | n/a | alga | 13 | 21 | 0 | n/a | 0 |
Populus trichocarpa | poplar | eudicot | 304 | 19 | 0 | n/a | 0 |
Sorghum bicolor | sorghum | monocot | 633 | 10 | 522 | 0.80 | 227 |
Theobroma cocoa | cacao | eudicot | 214 | 10 | 77 | 3.17 | 52 |
Vitis vinifera | grapevine | eudicot | 414 | 19 | 49 | 1.73 | 45 |
Zea mays | maize | monocot | 1969 | 10 | 13833 | 1.29 | 516 |
Total | Â | Â | Â | Â | 16243 | 1.20 | 2476 |