Figure 3
From: Short read sequence typing (SRST): multi-locus sequence types from short reads
IncI1 plasmid STs detected among S. sonnei. Minimum spanning tree of all IncI1 STs present in the IncI1 plasmid MLST database as at March 13, 2012, generated using Phyloviz (http://www.phyloviz.net). STs detected among S. sonnei read sets are highlighted; node colour indicates the country of origin according to the legend provided (bottom-right); node size indicates the number of isolates according to the inset circle legend (top-left). Nodes representing known STs are labeled in black with the ST number (7, 13, 16, 26, 27, 55), unlabeled nodes are novel STs (novel combinations of known alleles). Dates of isolation are indicated for larger groups (coloured text). Arrow indicates the position of ST31, identified in isolates of E. coli O104:H4 associated with an outbreak in Germany in 2011