Table 1 The number of reads mapped to RefSeq sequences and RP pseudogenes for both the composite genome and the unaltered human genome (hg18) for each tissue
From: Detecting transcription of ribosomal protein pseudogenes in diverse human tissues from RNA-seq data
Tissue | RP Pseudogenes | RefSeq Sequences | ||||
|---|---|---|---|---|---|---|
Composite genome | hg18 | Ratio | Composite genome | hg18 | Ratio | |
Adipose | 708 | 22613 | 0.03 | 22018081 | 23753007 | 0.93 |
Adrenal | 2439 | 22280 | 0.11 | 19436010 | 21074345 | 0.92 |
Brain | 712 | 3853 | 0.18 | 11585759 | 12357788 | 0.94 |
Breast | 1603 | 15951 | 0.10 | 22962845 | 23060856 | 1.00 |
Colon | 1066 | 22948 | 0.05 | 21458813 | 21618780 | 0.99 |
Heart | 562 | 2374 | 0.24 | 12622175 | 13502482 | 0.93 |
Kidney | 1341 | 5928 | 0.23 | 20630500 | 22278600 | 0.93 |
Liver | 328 | 2359 | 0.14 | 16689110 | 17958332 | 0.93 |
Lung | 1128 | 11918 | 0.09 | 28648503 | 31274037 | 0.92 |
Lymph | 1456 | 14010 | 0.10 | 22126747 | 23998836 | 0.92 |
Muscle | 459 | 8705 | 0.05 | 25836676 | 27662752 | 0.93 |
Ovary | 1501 | 34608 | 0.04 | 21842763 | 23663484 | 0.92 |
Prostate | 1280 | 14976 | 0.09 | 30329651 | 32822472 | 0.92 |
Testes | 1885 | 19417 | 0.10 | 23356973 | 25123824 | 0.93 |
Thyroid | 4064 | 22250 | 0.18 | 24800037 | 26627946 | 0.93 |
White Blood Cells | 1095 | 14256 | 0.08 | 25487259 | 27812790 | 0.92 |
Average | 1351 | 14902 | 0.11 | 21864493 | 23411895 | 0.94 |