From: An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies
 | Number of ER-a targets found (out of 33) | |||
---|---|---|---|---|
Normalization approach | Enrichment p-value < 0.05 | < 0.10 | < 0.20 | < 0.50 |
VSN | 7 | 8 | 11 | 23 |
LOWESS | 6 | 7 | 10 | 25 |
Quantile | 8 | 9 | 12 | 25 |
T-quantile | 9 | 10 | 14 | 24 |
Tukey's biweight scaling | 7 | 8 | 11 | 23 |
Peng's method | 5 | 5 | 9 | 23 |