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Table 3 Small RNAs at long inverted repeats in T. brucei

From: Small interfering RNA-producing loci in the ancient parasitic eukaryote Trypanosoma brucei

Name

Start/End

RLa

Identity

wt

dcl1

dcl2

  

(bp)

 

total reads

%wt

%wt

Tb927_02_IR1

898600/902200

422

100%

403

52%

9%

Tb927_02_IR2

994300/100060

10,011

99% (14b)

8,681

56%

24%

Tb927_07_IR3

1125000/1134900

3,636

99% (1)

372,045

73%

41%

Tb927_07_IR4

1889100/1896500

2,520

100%

55,854

71%

103%

Tb927_08_IR5

1048400/1059500

1,743

99% (5)

1,390

108%

49%

Tb927_10_IR6

467000/478000

853

99% (8)

4,387

38%

6%

Tb927_11_IR7

4219000/4231000

1,814

99% (3)

9,296

52%

2%

  1. aRL, repeat length.
  2. bnumber of mismatches between the two repeats.
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BMC Genomics

ISSN: 1471-2164

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