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Table 1 Distribution of potential shared DNA motifs in genomic regions

From: Identification and analysis of pig chimeric mRNAs using RNA sequencing data

Type

3′ Up

3′ Exon

3′ Intron

3′ Down

Total

5′ Up

72 (6)

1 (0)

46 (9)

55 (7)

174 (22)

5′ Exon

0 (0)

0 (0)

2 (0)

0 (0)

2 (0)

5′ Intron

38 (2)

0 (0)

38 (10)

42 (18)

118 (30)

5′ Down

66 (11)

1 (0)

43 (4)

41 (14)

151 (29)

Total

176 (19)

2 (0)

129 (23)

138 (39)

445 (81)

  1. The table indicates the count of potential DNA motifs shared within the genomic regions of the 5′ and 3′ partners. The rows represent the genomic regions for the upstream, exon, intron, and downstream regions of the 5′ partner and the columns of the 3′ partner. Numbers in parentheses indicate the count of shared sequences that significantly match the known DNA motifs in the JASPAR CORE (P<0.00065 and false motif discovery rate < 0.05). Up: upstream; Down: downstream.
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BMC Genomics

ISSN: 1471-2164

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