MMpred: functional miRNA – mRNA interaction analyses by miRNA expression prediction

Stempor, Przemyslaw A; Cauchi, Michael; Wilson, Paul

doi:10.1186/1471-2164-13-620

BMC Genomics

Table 1 The sample of the mapping table containing information from miRBase and Ensembl

From: MMpred: functional miRNA – mRNA interaction analyses by miRNA expression prediction

Mirbase_id	s.	Overlap	Evidence	Ensembl_gene_id	Ensembl_transcript_id	Affy_hg_u133_plus_2	Affy_hu x _1_0_st_v2	Chromosome	Start_ position	End_ position	miR	miR*
hsa-let-7a-3	+	exon	HGNC_automatic_transcript	ENSG00000197182	ENST00000360737	232480_at	3948921	22	46449741	46509808	hsa-let-7a	hsa-let-7a*
hsa-let-7a-3	+	exon	Vega_transcript	ENSG00000197182	ENST00000360737	232480_at	3948949	22	46449741	46509808	hsa-let-7a	hsa-let-7a*
hsa-let-7b	+	exon	HGNC_automatic_transcript	ENSG00000197182	ENST00000360737	232480_at	3948921	22	46449741	46509808	hsa-let-7b	hsa-let-7b*
hsa-let-7b	+	exon	Vega_transcript	ENSG00000197182	ENST00000360737	232480_at	3948949	22	46449741	46509808	hsa-let-7b	hsa-let-7b*
hsa-let-7c	+	intron	HGNC_curated_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915214	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	HGNC_curated_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915194	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	HGNC_curated_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915317	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	HGNC_curated_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915201	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	HGNC_curated_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915291	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	HGNC_curated_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915202	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	HGNC_curated_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915257	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	HGNC_curated_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915275	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	HGNC_automatic_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915192	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	Vega_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915318	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	Vega_transcript	ENSG00000215386	ENST00000308787	1559901_s_at	3915193	21	17442842	17982094	hsa-let-7c	hsa-let-7c*
hsa-let-7c	+	intron	Vega_transcript	ENSG00000215386	ENST00000400178	1559901_s_at	3915214	21	17442842	17982094	hsa-let-7c	hsa-let-7c*

This table is used by the mapping function, essential for both prediction methods.

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ISSN: 1471-2164

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