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Table 3 Low temperature responsive transcripts related to 'Chloroplast'

From: Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress

Probe Name

Description

4 h/0 h

9 h/0 h

9 h/4 h

AGI Locus

E Value

  

Log2 Ratio

  

CUST_12882

CCL (CCR-LIKE)

-

4.19

3.26

AT3G26740

1.90E-25

CUST_6863

FAB1 (fatty acid biosynthesis 1)

3.45

4.17

-

AT1G74960

2.10E-13

CUST_9556

CAB1 (chlorophyll a/b binding protein 1)

2.84

4.06

1.22

AT1G29930

9.00E-134

CUST_14118

SSI2 (fatty acid biosynthesis 2)

2.31

3.69

1.38

AT2G43710

1.80E-57

CUST_16917

lipid-associated family protein

2.09

3.48

-

AT4G39730

5.50E-44

CUST_222

PDS1 (PHYTOENE DESATURATION 1)

-

2.47

1.74

AT1G06570

2.00E-13

CUST_19871

dehydrodolichyl diphosphate synthase

-

2.21

-

AT5G58770

1.60E-42

CUST_3426

DNA binding

-

2.15

1.40

AT2G37020

1.60E-44

CUST_11923

MEE14 (maternal effect embryo arrest 14)

-

1.85

1.81

AT2G15890

3.40E-42

CUST_8767

hydrolase, alpha/beta fold family protein

-

1.76

-

AT5G13800

2.70E-33

CUST_4530

ZFP5 (ZINC FINGER PROTEIN 5)

-

1.50

-

AT1G10480

9.70E-19

CUST_15215

thylakoid lumenal 20 kDa protein

-

1.45

1.13

AT3G56650

2.50E-22

CUST_10800

hydrolase

1.03

1.38

-

AT2G35450

4.30E-07

CUST_6415

pentatricopeptide (PPR) repeat-containing protein

-

1.28

-

AT3G02650

9.00E-20

CUST_9148

AMY3 (alpha-amylase-like 3)

-

1.24

-

AT1G69830

2.80E-53

CUST_20805

BIGYIN

1.36

1.22

-

AT3G57090

3.40E-23

CUST_3083

hypothetical protein

-

1.13

-

AT5G59400

1.10E-46

CUST_3051

CAT2 (catalase2)

-

1.11

1.01

AT4G35090

7.60E-76

CUST_4761

hypothetical protein

-

1.07

-

AT4G10000

6.40E-10

CUST_20137

NFU3 (NFU domain protein 3)

-

1.04

-

AT4G25910

4.30E-17

CUST_7076

hypothetical protein

-

1.01

-

AT2G42130

1.30E-40

CUST_4922

CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)

-

-1.00

-

AT3G25690

1.60E-09

CUST_14809

SIGB (SIGMA FACTOR B)

-

-1.03

-

AT1G08540

5.30E-20

CUST_14166

GSTU19 (glutathione transferase)

-

-1.12

-

AT1G78380

1.90E-70

CUST_1453

CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)

-

-1.13

-

AT3G25690

2.60E-95

CUST_12230

amine oxidase family protein

-

-1.22

-

AT3G09580

4.10E-90

CUST_7714

PTF1 (PLASTID TRANSCRIPTION FACTOR 1)

-

-1.26

-

AT3G02150

2.00E-12

CUST_18664

rubredoxin family protein

-

-1.28

-

AT1G54500

2.90E-43

CUST_1805

hypothetical protein

-

-1.29

-

AT5G40470

3.90E-15

CUST_16156

dehydrodolichyl diphosphate synthase

-

-1.29

-

AT5G58770

1.20E-14

CUST_15952

CHUP1 (chloroplast unusual positioning 1)

-

-1.37

-

AT3G25690

1.70E-69

CUST_19234

LHCA4 (photosystem I light harvesting complex gene 4)

-

-1.39

-

AT3G47470

8.80E-51

CUST_2381

NCED4 (nine-cis-epoxycarotenoid dioxygenase 4)

-

-1.45

-

AT4G19170

1.00E-63

CUST_15061

hypothetical protein

-

-1.48

-1.08

AT3G22970

1.80E-44

CUST_5552

pentatricopeptide (PPR) repeat-containing protein

-

-1.49

-

AT3G42630

1.40E-63

CUST_10020

thioredoxin family protein

-

-1.52

-

AT1G08570

1.40E-43

CUST_2294

ATOFP15/OFP15

-

-1.55

-1.09

AT2G36050

1.40E-28

CUST_7622

DNAJ heat shock protein, putative

-

-1.57

-

AT2G17880

9.20E-25

CUST_5765

DVL13/RTFL2 (ROTUNDIFOLIA LIKE 2)

-

-1.62

-

AT2G29125

2.50E-16

CUST_3996

hypothetical protein

-

-1.64

-1.05

AT1G68430

4.50E-13

CUST_8087

xylulose kinase, putative

-

-1.98

-

AT2G21370

1.60E-56

CUST_6408

PSAL (photosystem I subunit L)

-2.47

-2.31

-

AT4G12800

9.80E-48

  1. Notes: Positive and negative values of Log2 Ratio are either up- or down-regulated genes in the three pair-comparisons. No significant fold changes are indicated as "-".