Skip to main content

Table 3 Arrangement of Al tolerance associated markers (AS), redundant markers and outliers under positive (PS) and balancing (BS) selection for separate chromosomes and they localization on available genetic maps of triticale [19] and rye [15]

From: Aluminum tolerance association mapping in triticale

Chromo-some

Structure

ΔK

(extreme

value)

Associated marker (AS)/outlier PS and BS

Association mapping

Markers at the same position on the available maps as the associated, redundant and markers under selection

Rye map

[15]

(cM)

Triticale map[19]

(cM)

   

TASSEL

SML

   
   

Marker name

Redundant markers

GML

( p -value)

r 2

MLM

( p -value)

r 2

Bonferroni test

Marker

name

p- value

(whiteout assuming data structure)

   

3R

K2 (3 100)

AS

wPt-3564

-

3.63E-09

0.220

7.92E-04

0.117

1.31E-03

wPt-3564

0.0000

-

177.6

-

   

-

-

-

-

-

-

 

rPt-401520

0.0145

rPt-507396, rPt-507318

308.4

-

  

PS

rPt-400318

-

-

-

-

-

-

-

-

-

-

-

   

rPt-508819

-

-

-

-

-

-

-

-

-

-

-

   

rPt-390252

-

-

-

-

-

-

-

-

rPt-400789

349.3

-

   

rPt-508975

-

-

-

-

-

-

-

-

rPt-400864, rPt-402392, rPt-400152, wPt-6762, wPt-7540

-

50.6

   

rPt-2965

-

-

-

-

-

-

-

-

rPt-346892, rPt-347072, rPt-346946, rPt-347454, rPt-346755

109.4

-

   

rPt-402334

-

-

-

-

-

-

-

-

-

-

-

4R

K2 (8 300)

AS

rPt-505674

-

1.99E-07

0.146

8.01E-07

0.153

3.40E-04

rPt-505674

0.0194

rPt-507649, rPt-401692

160.1

-

   

rPt-507784

-

8.02E-07

0.152

4.23E-05

0.126

 

-

-

rPt-507581

348.4

-

   

rPt-401376

-

1.74E-06

0.144

1.53E-04

0.107

 

rPt-401376

0.0125

rPt-390125, rPt-346609,

163.8

-

    

rPt-399885

-

-

-

-

 

-

-

rPt-509441, rPt-513924, rPt-508199, rPt-1422, rPt-400270, rPt-6513,

rPt-399885, tPt-5795

160.7

67.3

    

rPt-390125

-

-

-

-

 

-

-

-

163.8

-

    

rPt-400270

-

-

-

-

 

-

-

-

161.3

67.3

    

rPt-389881

-

-

-

-

 

-

-

-

163.2

-

   

rPt-402237

-

4.07E-06

0.135

5.22E-06

0.152

 

-

-

rPt-401410

124.3

-

   

rPt-508577

-

2.30E-05

0.099

1.36E-04

0.088

 

-

-

-

-

-

   

rPt-411417

-

3.71E-05

0.094

1.65E-04

0.086

 

-

-

-

7.1

 
   

rPt-402563

-

3.79E-04

0.088

3.49E-03

0.068

 

rPt-402563

0.0087

-

-

-

   

-

-

-

-

-

-

-

rPt-509188

0.0135

rPt-402590, rPt-389763

94.0

-

   

-

-

-

-

-

-

-

rPt-410768

0.0184

rPt-507981

238.1

-

  

PS

rPt-505775

-

-

-

-

-

-

-

-

-

-

-

   

rPt-505352

-

-

-

-

-

-

-

-

rPt-402302, rPt-506593, rPt-398512

rPt-389700, rPt-9611, rPt-509695,

rPt-7906, rPt-400317, rPt-401825,

tPt-514203, rPt-507403, tPt-512937, rPt-505288, wPt-9994

154.3

58.4

   

rPt-400317

-

-

-

-

-

-

-

-

rPt-389700, rPt-9611, rPt-509695,

rPt-7906, rPt-505775, rPt-401825,

tPt-514203, rPt-507403, tPt-512937, rPt-505288, wPt-9994

153.7

58.4

  

BS

rPt-507894

-

-

-

-

-

-

-

-

rPt-506357, rPt-399506, rPt-509554, rPt-509722, tPt-512921, wPt-2714

139.1

55.1

   

rPt-506357

-

-

-

-

-

-

-

-

rPt-507894

139.1

-

   

rPt-506527

-

-

-

-

-

-

-

-

-

-

-

   

rPt-411417

-

-

-

-

-

-

-

-

-

7.1

-

   

rPt-389465

-

-

-

-

-

-

-

-

-

-

-

   

rPt-508454

-

-

-

-

-

-

-

-

-

-

-

   

rPt-389455

-

-

-

-

-

-

-

-

-

-

-

   

rPt-506540

-

-

-

-

-

-

-

-

-

-

-

   

rPt-507403

-

-

-

-

-

-

-

-

tPt-512937

-

59.5

   

rPt-508638

-

-

-

-

-

-

-

-

-

-

-

   

rPt-508722

-

-

-

-

-

-

-

-

rPt-507894, rPt-399506, rPt-509554,

tPt-512921, wPt-2714

-

55.1

   

rPt-506534

-

-

-

-

-

-

-

-

wPt-8954

-

52.9

   

rPt-402302

-

-

-

-

-

-

-

-

rPt-506593, rPt-505352, rPt-398512

154.0

-

6R

K2 (88)

AS

rPt-399834

-

3.75E-09

0.178

1.67E-07

0.169

 

-

-

-

-

-

    

rPt-507199

-

-

-

-

 

-

-

rPt-8205

-

43.4

    

rPt-507896

-

-

-

-

 

-

-

rPt-3995874, rPt-399777, rPt-399399, rPt-506885, tPt-513728, rPt-507896, rPt-399587, rPt-411022, rPt-401093, rPt-390525

-

45.6

   

rPt-402561

-

3.32E-08

0.158

8.42E-07

0.150

4.27E-04

-

-

wPt-6978, wPt-2013, wPt-1320,

rPt-506799, rPt-505233, rPt-400005, rPt-400819

-

44.5

   

rPt-390636

-

1.29E-06

0.126

8.13E-06

0.124

 

-

-

-

549.5

-

   

rPt-401083

-

8.22E-06

0.110

2.96E-05

0.110

 

-

-

-

-

-

   

rPt-402018

-

1.14E-05

0.107

8.97E-05

0.097

 

-

-

-

486.1

-

   

rPt-402447

-

1.14E-05

0.107

8.97E-05

0.097

 

-

-

-

486.1

-

   

rPt-507674

-

1.14E-05

0.107

8.97E-05

0.097

 

-

-

-

430.4

-

   

rPt-402015

-

1.14E-05

0.107

8.97E-05

0.097

 

-

-

-

486.1

-

   

rPt-508379

-

1.53E-05

0.105

5.14E-05

0.103

 

-

-

-

-

-

   

rPt-399406

-

3.28E-05

0.098

1.73E-04

0.090

 

-

-

-

486.1

-

   

rPt-505870

-

8.60E-05

0.089

2.26E-04

0.087

 

-

-

rPt-509502

540.6

85.7

   

-

-

-

-

-

-

-

rPt-390698

0.016

rPt-389306, rPt-402575, wPt-1676,

rPt-508661, tPt-6200, rPt-507438,

rPt-401326, rPt-398845, wPt-8548

rPt-505525, wPt-2077, rPt-389414,

rPt-508426, rPt-509027, rPt-401648, Pt-410992, rPt-400907, rPt-389714, tPt-512866, Xrems1247

93.0

4.4

   

-

-

-

-

-

-

-

rPt-509167

0.006

-

556.9

-

   

-

-

-

-

-

-

-

rPt-506198

0.007

-

-

-

   

-

-

-

-

-

-

-

rPt-505347

0.011

-

-

-

  

PS

rPt-401893

-

-

-

-

-

-

-

-

rPt-389665, rPt-508711

148.6

-

  

BS

rPt-401470

-

-

-

-

-

-

-

-

-

-

-

   

rPt-389991

-

-

-

-

-

-

-

-

-

-

-

   

rPt-411086

-

-

-

-

-

-

-

-

-

-

-

   

rPt-505673

-

-

-

-

-

-

-

-

-

-

-

   

rPt-506099

-

-

-

-

-

-

-

-

rPt-509333, rPt-509333, rPt-506902,

rPt-399825, rPt-411161, rPt-399879,

wPt-6868, wPt-0935

381.9

51.2

   

rPt-509333

-

-

-

-

-

-

-

-

-

-

-

   

rPt-402561

-

-

-

-

-

-

-

-

wPt-6978, wPt-2013, wPt-1320,

rPt-506799, rPt-505233, rPt-400005,

rPt-400819

-

44.5

   

rPt-399991

-

-

-

-

-

-

-

-

-

-

-

   

rPt-399245

-

-

-

-

-

-

-

-

-

-

-

   

rPt-509728

-

-

-

-

-

-

-

-

-

-

-

   

rPt-390337

-

-

-

-

-

-

-

-

-

-

-

   

rPt-400060

-

-

-

-

-

-

-

-

-

-

-

   

rPt-508690

-

-

-

-

-

-

-

-

-

-

-

   

rPt-401554

-

-

-

-

-

-

-

-

-

-

-

7R

K2 (15 300)

AS

rPt-401366

-

1.83E-08

0.177

1.09E-05

0.130

 

-

-

-

-

-

    

rPt-506317

-

-

-

  

-

-

-

-

-

    

rPt-508078

-

-

-

  

-

-

-

-

-

    

rPt-509357

-

-

-

  

-

-

-

-

-

   

rPt-509359

-

1.83E-08

0.177

1.09E-05

0.130

 

-

-

-

-

-

   

rPt-505798

-

1.83E-08

0.177

1.09E-05

0.130

 

rPt-505798

0.0096

-

-

-

   

rPt-508078

-

1.83E-08

0.177

1.09E-05

0.130

 

rPt-508078

0.0009

-

-

-

   

rPt-509056

-

6.03E-08

0.186

4.23 E-06

0.169

 

-

-

-

232.8

-

   

rPt-505154

-

6.03E-08

0.186

4.23 E-06

0.169

2.00E-03

-

-

-

232.8

-

   

rPt-8750

-

3.61E-06

0.144

3.25 E-05

0.139

 

rPt-8750

0.0038

-

-

-

    

rPt-399570

-

-

-

-

 

-

-

-

-

-

    

rPt-401526

-

-

-

-

 

-

-

rPt-398753, rPt-400372, wPt-2793,

rPt-400061, wPt-345783, rPt-506142, wPt-4738, rPt-506028, wPt-11703,

rPt-508380

-

35.7

    

rPt-400816

-

-

-

-

 

-

-

 

-

 
    

rPt-399664

-

-

-

-

 

-

-

 

-

 
    

rPt-399292

-

-

-

-

 

-

-

-

-

-

    

rPt-390741

-

-

-

-

 

-

-

-

-

-

   

SCM92_177

-

8.57E-06

0.135

9.05 E-04

0.092

 

-

-

-

-

-

   

rPt-390593

-

1.85E-05

0.126

1.28 E-03

0.087

 

-

-

-

-

-

    

rPt-401828

-

-

-

-

 

-

-

-

-

-

   

tPt-8771

-

4.67E-05

0.116

3.70 E-04

0.104

 

-

-

-

-

-

   

rPt-399325

-

8.95E-05

0.090

1.39 E-03

0.066

 

rPt-399325

0.005

-

-

92.7

  

PS

rPt-400793

-

-

-

-

-

-

-

-

-

-

-

   

SCM16_259

-

-

-

-

-

-

-

-

-

-

-

  

BS

rPt-401363

-

-

-

-

-

-

-

-

-

-

-

   

rPt-509288

-

-

-

-

-

-

-

-

-

-

-

   

rPt-401221

-

-

-

-

-

-

-

-

-

-

-

   

SCM92_295

-

-

-

-

-

-

-

-

-

-

-

   

rPt-389372

-

-

-

-

-

-

-

-

-

-

-

   

rPt-506250

-

-

-

-

-

-

-

-

-

-

-

   

rPt-399665

-

-

-

-

-

-

-

-

-

-

-

   

rPt-508868

-

-

-

-

-

-

-

-

-

-

-

   

rPt-402262

-

-

-

-

-

-

-

-

-

-

-

   

rPt-390750

-

-

-

-

-

-

-

-

-

-

-

  1. Bolded markers - markers associated according to both methods (TASSEL and SML). ΔK indicates the most probable structure of the data. In bracket the extreme of the ΔK is indicated. Significance of the associated markers is indicated for GLM, MLM and SML. The r2 and Bonferroni test p-values are also indicated for the reference.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us