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Table 6 Summarized number of SNPs

From: A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings

Origin of reads at SNP position

Number of SNPs

ci/ci

15,843

ci/c

7,158

ci/i

2,547

c/i

886

c/c

817

i/i

437

  1. Number of SNPs with a specific composition of reads. ci/ci: variant and reference nucleotide appeared in reads from coastal and interior libraries; ci/c, ci/i: variant or reference nucleotide appeared only in reads of the coastal or interior libraries, the other one appeared in reads of both kind of libraries; c/i: variant or reference nucleotide appeared only in reads of the coastal libraries, the other one only in reads of the interior libraries; c/c, i/i: variant and reference nucleotides appeared only in reads of coastal or interior libraries.
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BMC Genomics

ISSN: 1471-2164

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