Table 1 Expression analysis of Papaya Micro RNAs
From: Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
MiR ID | qPCR fold change | Deep sequencing reads per million | |||||
|---|---|---|---|---|---|---|---|
Flower | Leaves | PRSV infected leaves | Flower | Leaves | PRSV infected leaves | ||
1 | cpa-MIR156/57a | 1.00 | 1.46 | 2.70 | 132.68 | 2426.48 | 1093.61 |
2 | cpa-MIR156/57b | 1.00 | 0.09 | 0.03 | 132.47 | 815.04 | 540.48 |
3 | cpa-MIR159a | 1.00 | 0.80 | 0.05 | 441.84 | 805.61 | 0.00 |
4 | cpa-MIR159b† | 1.00 | 0.06 | 0.03 | 0.00 | 0.00 | 0.67 |
5 | cpa-MIR159/319† | 1.07 | 0.00 | 0.00 | |||
6 | cpa-MIR160 | 1.00 | 0.18 | 0.46 | 19.32 | 16.08 | 11.32 |
cpa-MIR160* | 1.00 | 0.32 | 27.34 | 0.00 | 0.00 | 191.11 | |
7 | cpa-MIR164 | 1.00 | 0.10 | 0.25 | 229.94 | 114.05 | 77.69 |
8 | cpa-MIR165/166a†† | 1.00 | 1.20 | 0.70 | 16800.30 | 29790.48 | 21150.36 |
9 | cpa-MIR165/166b†† | 4096.54 | 8447.99 | 6703.93 | |||
11 | cpa-MIR165/166c†† | 0.00 | 161.8 | 0.00 | |||
10 | cpa-MIR166b* | 1.00 | 0.47 | 29.51 | 0.00 | 0.00 | 456.35 |
cpa-MIR166c* | 0.00 | 83.60 | 0.00 | ||||
12 | cpa-MIR167a††† | 1.00 | 1.17 | 2.30 | 171.54 | 155.63 | 35.74 |
13 | cpa-MIR167b††† | 60.11 | 650.83 | 176.68 | |||
14 | cpa-MIR167c††† | 17.60 | 4725.63 | 1581.26 | |||
cpa-MIR167* | 1.00 | 1.13 | 0.46 | 0.00 | 168.50 | 0.00 | |
15 | cpa-MIR169 | 1.00 | 0.19 | 0.26 | 0.00 | 0.00 | 0.44 |
16 | cpa-MIR170/71 | 1.00 | 0.41 | 0.69 | 22.97 | 94.32 | 35.96 |
17 | cpa-MIR172 | 1.00 | 0.07 | 0.13 | 5.58 | 0.00 | 0.00 |
18 | cpa-MIR390 | 1.00 | 0.48 | 1.14 | 428.53 | 0.00 | 0.00 |
cpa-MIR390* | 1.00 | 0.12 | 0.31 | 0.00 | 0.00 | 8.88 | |
19 | cpa-MIR393 | 1.00 | 0.57 | 0.43 | 1.50 | 0.00 | 0.00 |
cpa-MIR393* | 1.00 | 0.42 | 6.79 | 0.00 | 0.00 | 11.10 | |
20 | cpa-MIR394 | 1.00 | 0.70 | 0.57 | 167.67 | 202.80 | 116.31 |
21 | cpa-MIR395 | 1.00 | 1.36 | 0.54 | 0.00 | 1.50 | 7.10 |
22 | cpa-MIR396 | 1.00 | 2.63 | 0.15 | 0.00 | 55.74 | 0.00 |
cpa-MIR396* | 1.00 | 0.72 | 5.25 | 79.01 | 0.00 | 1021.03 | |
23 | cpa-MIR408 | 1.00 | 0.11 | 0.15 | 9.23 | 0.00 | 0.00 |
cpa-MIR408* | 1.00 | 0.16 | 12.41 | 0.00 | 4.07 | 45.72 | |
24 | cpa-MIR535 | 1.00 | 0.51 | 0.23 | 292.63 | 686.85 | 348.48 |
25 | cpa-MIR-novel_01 | 1.00 | 0.60 | 0.71 | 13.31 | 30.87 | 9.10 |
26 | cpa-MIR-novel_02 | 1.00 | 0.15 | 1.43 | 225.86 | 69.46 | 3595.35 |
27 | cpa-MIR-novel_03 | 1.00 | 0.22 | 30.76 | 8.37 | 8.15 | 19.31 |
28 | cpa-MIR-novel_04 | 1.00 | 0.19 | 0.36 | 3.01 | 6.43 | 3.33 |
29 | cpa-MIR-novel_05 | 1.00 | 0.20 | 0.82 | 110.14 | 134.84 | 21.75 |
30 | cpa-MIR-novel_06 | 1.00 | 0.11 | 0.52 | 54.10 | 40.52 | 0.00 |
cpa-MIR-novel_06* | 1.00 | 0.19 | 284.64 | 0.00 | 0.00 | 108.10 | |
31 | cpa-MIR-novel_07 | 1.00 | 0.15 | 4.12 | 3.44 | 0.00 | 1.55 |
32 | cpa-MIR-novel_08 | 1.00 | 0.22 | 0.16 | 0.00 | 1.29 | 0.00 |
33 | cpa-MIR-novel_09a | 1.00 | 0.30 | 0.29 | 0.00 | 0.64 | 0.00 |
34 | cpa-MIR-novel_09b | 1.00 | 0.45 | 0.44 | 0.00 | 13.51 | 29.30 |
35 | cpa-MIR-novel_10 | 1.00 | 2.15 | 1.67 | 71.71 | 0.00 | 0.00 |
36 | cpa-MIR-novel_11 | 1.00 | 0.73 | 0.44 | 57.75 | 0.00 | 0.00 |
37 | cpa-MIR-novel_12 | 1.00 | 0.02 | 0.14 | 37.36 | 0.00 | 0.00 |
38 | cpa-MIR-novel_13 | 1.00 | 0.53 | 0.63 | 6.44 | 0.00 | 0.00 |
39 | cpa-MIR-novel_14 | 1.00 | 0.28 | 0.00 | 5.37 | 0.00 | 0.00 |
40 | cpa-MIR-novel_15 | 1.00 | 0.29 | 0.28 | 4.29 | 0.00 | 0.00 |
41 | cpa-MIR-novel_16 | 1.00 | 0.28 | 0.56 | 3.01 | 0.00 | 0.00 |
42 | cpa-MIR-novel_17 | 1.00 | 0.00 | 0.51 | 2.58 | 0.00 | 0.00 |
43 | cpa-MIR-novel_18 | 1.00 | 0.87 | 2.52 | 2.58 | 0.00 | 0.00 |
44 | cpa-MIR-novel_19 | 1.00 | 0.24 | 0.65 | 2.58 | 0.00 | 0.00 |
45 | cpa-MIR-novel_20 | Not detected by qPCR | 4.07 | 0.00 | 0.00 | ||
46 | cpa-MIR-novel_21 | 1.00 | 0.29 | 0.24 | 2.36 | 0.00 | 0.00 |
47 | cpa-MIR-novel_22 | 1.00 | 1.69 | 0.29 | 2.15 | 0.00 | 0.00 |
48 | cpa-MIR-novel_23 | 1.00 | 0.28 | 0.19 | 2.15 | 0.00 | 0.00 |
49 | cpa-MIR-novel_24 | 1.00 | 0.13 | 0.00 | 0.00 | 12.22 | 0.00 |
50 | cpa-MIR-novel_25 | 1.00 | 0.14 | 0.00 | 0.00 | 9.00 | 0.00 |
51 | cpa-MIR-novel_26 | 1.00 | 0.37 | 0.48 | 0.00 | 5.57 | 0.00 |
52 | cpa-MIR-novel_27 | 1.00 | 1.00 | 0.10 | 0.00 | 4.07 | 0.00 |
53 | cpa-MIR-novel_28 | Not detected by qPCR | 0.00 | 2.36 | 0.00 | ||
54 | cpa-MIR-novel_29 | 1.00 | 0.04 | 0.11 | 0.00 | 3.22 | 0.00 |
55 | cpa-MIR-novel_30 | 1.00 | 0.42 | 0.22 | 0.00 | 3.00 | 0.00 |
56 | cpa-MIR-novel_31 | 1.00 | 0.21 | 0.88 | 0.00 | 2.79 | 0.00 |
57 | cpa-MIR-novel_32 | 1.00 | 0.17 | 0.40 | 0.00 | 2.14 | 0.00 |
58 | cpa-MIR-novel_33 | 1.00 | 6.94 | 5.25 | 0.00 | 0.00 | 6.66 |
59 | cpa-MIR-novel_34 | 1.00 | 0.00 | 2.06 | 0.00 | 0.00 | 6.66 |
60 | cpa-MIR-novel_35 | 0.00 | 1.00 | 3.60¥ | 0.00 | 0.00 | 2.44 |