A genome-wide scan of selective sweeps in two broiler chicken lines divergently selected for abdominal fat content

Zhang, Hui; Wang, Shou-Zhi; Wang, Zhi-Peng; Da, Yang; Wang, Ning; Hu, Xiao-Xiang; Zhang, Yuan-Dan; Wang, Yu-Xiang; Leng, Li; Tang, Zhi-Quan; Li, Hui

doi:10.1186/1471-2164-13-704

Table 5 Reported QTL near the core regions with P <0.01 in the lean and fat lines

From: A genome-wide scan of selective sweeps in two broiler chicken lines divergently selected for abdominal fat content

Lean line
Chr	Core region (bp)	Trait	QTL position (bp)	F-ratio	P-value	Reference
1	39360501-39455853	AFP	1937738-52700434	1.474	Suggestive	[21]
1	49926970-49964278	AFP	25998723-65961966	1.732	Suggestive	[21]
		AFW	25998723-65961966	1.882	Suggestive	[21]
		AFW	48175152- 51977642	8.14	Significant	[22]
1	173098805-173190831	AFW	158352237- 182910620	3.18	Significant	[23]
1	173098805-173190831	AFP	171224834- 174526878	20.34	Significant	[23]
2	3631683-3739002	AFW	3097660- 4097660	3.38	Suggestive	[24]
3	3794973-3861882	AFP	800029-110574691	1.364	Suggestive	[21]
3	10257926-10454969	AFP	800029-110574691	1.364	Suggestive	[21]
		AFW	6841859-13986734	8.16	Significant	[22]
		AFP	6841859- 57396057	7.9	Significant	[25]
		AFW	6841859- 44850897	7.4	Significant	[25]
3	14895290-14957057	AFP	800029-110574691	1.364	Suggestive	[21]
		AFW	6841859-13986734	8.16	Significant	[22]
		AFP	6841859- 57396057	7.9	Significant	[25]
		AFW	6841859- 44850897	7.4	Significant	[25]
		AFW	13986734-25508863	\	Suggestive	[26]
3	26957549-26996618	AFP	800029-110574691	1.364	Suggestive	[21]
		AFP	6841859- 57396057	7.9	Significant	[25]
		AFW	6841859- 44850897	7.4	Significant	[25]
		AFW	24160710-51592221	\	Suggestive	[27]
		AFW	25508863- 35512024	\	Suggestive	[26]
3	27303800-27335510	AFP	800029-110574691	1.364	Suggestive	[21]
		AFP	6841859- 57396057	7.9	Significant	[25]
		AFW	6841859- 44850897	7.4	Significant	[25]
		AFW	24160710-51592221	\	Suggestive	[27]
		AFW	25508863- 35512024	\	Suggestive	[26]
3	27382993-27430067	AFP	800029-110574691	1.364	Suggestive	[21]
		AFP	6841859- 57396057	7.9	Significant	[25]
		AFW	6841859- 44850897	7.4	Significant	[25]
		AFW	24160710-51592221	\	Suggestive	[27]
		AFW	25508863- 35512024	\	Suggestive	[26]
3	35555718-35610466	AFP	800029-110574691	1.364	Suggestive	[21]
		AFW	35512024-40755790	18.5	Significant	[28]
		AFP	35512024-40755790	13.1	Significant	[28]
4	17765695-17819334	AFW	17425871-18425871	\	Significant	[29]
4	46149116-46190279	AFW	42005559- 51609571	2.26	Suggestive	[30]
4	55424480-55472209	AFP	51266614- 88408499	16.0	Significant	[25]
4	83051637-83117974	AFP	51266614- 88408499	16.0	Significant	[25]
		AFW	80258156-88408499	6.9	Significant	[25]
		AFW	81539616- 84618310	2.04	Suggestive	[30]
5	23825115-23872187	AFW	18412554-42717839	21.8	Significant	[25]
		AFP	18723157- 43339045	19.4	Significant	[25]
		AFW	19782191- 30162990	\	Suggestive	[26]
		AFW	19782191- 30162990	7.04	Significant	[31]
5	42592517-42679460	AFW	18412554-42717839	21.8	Significant	[25]
		AFP	18723157- 43339045	19.4	Significant	[25]
		AFW	37226264-53779276	6.74	Significant	[31]
6	35354459-35390346	AFP	29647151- 37399694	6.9	Significant	[25]
7	28869664-28906344	AFW	25306930- 38010856	\	Suggestive	[27]
		AFW	28166221- 29166221	9.78	Significant	[32]
		AFW	28166221- 29166221	\	Significant	[33]
7	35674098-35715122	AFW	25306930- 38010856	\	Suggestive	[27]
9	16264832-16366749	AFW	13658592-23770679	5.03	Suggestive	[22]
9	16264832-16366749	AFW	15457880-16457880	7.0	Suggestive	[34]
10	19717086-19745274	AFP	16519830- 20778533	9.9	Significant	[28]
13	16758621-16783127	AFW	16327806- 18173123	2.10	Suggestive	[30]
15	7345639-7377799	AFW	1917251- 10769106	10.2	Significant	[25]
		AFP	2388961-10769106	12.8	Significant	[25]
		AFW	2798507-10769106	8.13	Significant	[22]
		AFW	2798507-10769106	5.67	Suggestive	[22]
		AFW	3717446-7928397	2.21	Suggestive	[30]
		AFP	3717446-7928397	2.22	Suggestive	[30]
Fat line
1	51248496-51279543	AFP	1937738-52700434	1.474	Suggestive	[21]
		AFW	48175152- 51977642	8.14	Significant	[22]
		AFP	25998723- 65961966	1.732	Suggestive	[21]
		AFW	25998723- 65961966	1.882	Suggestive	[21]
1	58120009-58215364	AFP	25998723- 65961966	1.732	Suggestive	[21]
		AFW	25998723- 65961966	1.882	Suggestive	[21]
		AFW	55261695-67128747	12.18	Significant	[35]
1	60171076-60254771	AFP	25998723- 65961966	1.732	Suggestive	[21]
		AFW	25998723- 65961966	1.882	Suggestive	[21]
		AFW	55261695-67128747	12.18	Significant	[35]
1	67763862-67830818	AFW	67327367-68327367	\	Significant	[33]
1	68213617-68257241	AFW	67327367-68327367	\	Significant	[33]
1	101535615-101635667	AFW	89938943-167462479	9.4	Significant	[36]
1	101535615-101635667	AFW	94157976- 102460326	6.11	Suggestive	[35]
1	114789487-114875623	AFW	113344161- 132660888	7.90	Suggestive	[35]
1	114789487-114875623	AFW	114143603- 115143603	7.1	Significant	[36]
1	125909995-126011984	AFW	113344161- 132660888	7.90	Suggestive	[35]
1	181800227-181883545	AFW	158352237-182910620	3.18	Significant	[23]
3	9177907-9222825	AFP	800029- 110574691	1.364	Suggestive	[21]
		AFW	6841859- 13986734	8.16	Significant	[22]
		AFW	6841859- 13986734	5.8	Suggestive	[22]
		AFP	6841859-57396057	7.9	Significant	[25]
		AFW	6841859-44850897	7.4	Significant	[25]
3	16143474-16194865	AFP	800029- 110574691	1.364	Suggestive	[21]
		AFP	6841859-57396057	7.9	Significant	[25]
		AFW	6841859-44850897	7.4	Significant	[25]
		AFW	13986734-25508863	\	Suggestive	[26]
3	24945839-24986772	AFP	800029- 110574691	1.364	Suggestive	[21]
		AFP	6841859-57396057	7.9	Significant	[25]
		AFW	6841859-44850897	7.4	Significant	[25]
		AFW	13986734-25508863	\	Suggestive	[26]
		AFW	24160710-51592221	\	Suggestive	[27]
3	44265116-44311493	AFP	800029- 110574691	1.364	Suggestive	[21]
		AFP	6841859-57396057	7.9	Significant	[25]
		AFW	6841859-44850897	7.4	Significant	[25]
		AFW	24160710-51592221	\	Suggestive	[27]
		AFW	40755790-45203763	7.5	Significant	[28]
		AFP	40755790-45203763	10.8	Significant	[28]
3	69863850-69906698	AFP	800029- 110574691	1.364	Suggestive	[21]
3	85874137-85931473	AFP	800029- 110574691	1.364	Suggestive	[21]
3	97227680-97337906	AFP	800029- 110574691	1.364	Suggestive	[21]
4	40653593-40713404	AFP	40473174-41473174	\	Significant	[32]
4	55950677-55991394	AFP	51266614- 88408499	16.0	Significant	[25]
4	86719441-86754976	AFP	51266614- 88408499	16.0	Significant	[25]
4	86719441-86754976	AFW	80258156-88408499	6.9	Significant	[25]
5	40239840-40261525	AFW	18412554- 42717839	21.8	Significant	[25]
		AFP	18723157- 43339045	19.4	Significant	[25]
		AFW	37226264- 53779276	6.74	Significant	[31]
		AFW	40158255- 41158255	\	Significant	[37]
		AFW	40158255- 41158255	\	Significant	[38]
		AFP	40158255- 41158255	\	Significant	[38]
5	47240577-47282933	AFW	37226264- 53779276	6.74	Significant	[31]
5	59811459-59880511	AFW	51748760-60234891	\	Significant	[26]
		AFW	53867807-62098509	11.87	Significant	[31]
		AFW	53867807-62098509	6.82	Significant	[31]
7	30090927-30155133	AFW	25306930- 38010856	\	Suggestive	[27]
7	31374271-31418061	AFW	25306930- 38010856	\	Suggestive	[27]
7	33795201-33904515	AFW	25306930- 38010856	\	Suggestive	[27]
7	33795201-33904515	AFW	32440861-34526547	2.08	Suggestive	[30]
7	36818722-36875768	AFW	25306930- 38010856	\	Suggestive	[27]
7	37031922-37124566	AFW	25306930- 38010856	\	Suggestive	[27]
9	2952291-3007034	AFW	2798942-3798942	\	Significant	[32]
9	2952291-3007034	AFP	2972071-3972071	\	Significant	[32]
11	9804894-9826761	AFW	6272742- 12810705	2.15	Suggestive	[30]
12	1157199-1170169	AFP	734209- 12275026	5.22	Significant	[28]
		AFP	734209- 12275026	4.51	Significant	[28]
		AFP	813709-1813709	\	Significant	[32]
15	8495796-8543001	AFW	1917251- 10769106	10.2	Significant	[25]
		AFP	2388961- 10769106	12.8	Significant	[25]
		AFW	2798507- 10769106	8.13	Significant	[22]
		AFW	2798507- 10769106	5.67	Suggestive	[22]
23	935267-970086	AFW	74802-1074802	\	Significant	[39]

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