Table 2 Conserved miRNAs from common bean
From: Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing
miRNA family | Reference miRNA | Sequence (5'- 3') | Length (nt) | Reads | ||||
|---|---|---|---|---|---|---|---|---|
LL | FL | RL | SL | Total | ||||
156 | ahy-miR156a | UGACAGAAGAGAGAGAGCAC | 20 | 56 | 15 | 8 | 41 | 120 |
ahy-miR156c | UUGACAGAAGAGAGAGAGCAC | 21 | 94 | 3512 | 3 | 317 | 3926 | |
ath-miR156a | UGACAGAAGAGAGUGAGCAC | 20 | 82529 | 63 | 3705 | 14478 | 100775 | |
ath-miR156g | CGACAGAAGAGAGUGAGCAC | 20 | 74 | 0 | 3 | 10 | 87 | |
bna-miR156a | UGACAGAAGAGAGUGAGCACA | 21 | 112 | 21 | 2 | 26 | 161 | |
ptc-miR156k | UGACAGAAGAGAGGGAGCAC | 20 | 47 | 0 | 6 | 2 | 55 | |
vvi-miR156e | UGACAGAGGAGAGUGAGCAC | 20 | 30 | 0 | 1 | 1 | 32 | |
zma-miR156k | UGACAGAAGAGAGCGAGCAC | 20 | 183 | 0 | 14 | 10 | 207 | |
157 | ath-miR157a | UUGACAGAAGAUAGAGAGCAC | 21 | 3114 | 2787 | 4370 | 4839 | 15110 |
ath-miR157d | UGACAGAAGAUAGAGAGCAC | 20 | 361 | 30 | 26 | 89 | 506 | |
159 | aqc-miR159 | UUUGGACUGAAGGGAGCUCUA | 21 | 33 | 312 | 43 | 89 | 477 |
pvu-miR159a.1 | UUUGGAUUGAAGGGAGCUCUA | 21 | 67007 | 1082688 | 180739 | 453692 | 1784126 | |
ath-miR159b | UUUGGAUUGAAGGGAGCUCUU | 21 | 3 | 438 | 135 | 178 | 754 | |
gma-miR159c | AUUGGAGUGAAGGGAGCUCCG | 21 | 0 | 0 | 1044 | 25 | 1069 | |
gma-miR159d | AGCUGCUUAGCUAUGGAUCCC | 21 | 78 | 148 | 202 | 240 | 668 | |
osa-miR159a.1 | UUUGGAUUGAAGGGAGCUCUG | 21 | 37 | 224 | 31 | 148 | 440 | |
osa-miR159f | CUUGGAUUGAAGGGAGCUCUA | 21 | 57 | 666 | 298 | 182 | 1203 | |
pta-miR159a | UUGGAUUGAAGGGAGCUCCA | 20 | 0 | 3 | 0 | 25 | 28 | |
160 | ath-miR160a | UGCCUGGCUCCCUGUAUGCCA | 21 | 136 | 5160 | 5474 | 104 | 10874 |
bdi-miR160 | UGCCUGGCUCCCUGUAUGCC | 20 | 9 | 212 | 225 | 5 | 451 | |
osa-miR160f | UGCCUGGCUCCCUGAAUGCCA | 21 | 9 | 3 | 240 | 2 | 254 | |
162 | ath-miR162a | UCGAUAAACCUCUGCAUCCAG | 21 | 597 | 583 | 517 | 1192 | 2889 |
zma-miR162 | UCGAUAAACCUCUGCAUCCA | 20 | 14 | 22 | 15 | 30 | 81 | |
164 | ath-miR164a | UGGAGAAGCAGGGCACGUGCA | 21 | 7245 | 5621 | 3628 | 1229 | 17723 |
ath-miR164c | UGGAGAAGCAGGGCACGUGCG | 21 | 49 | 71 | 91 | 122 | 333 | |
166 | gma-miR166a | UCGGACCAGGCUUCAUUCCCC | 21 | 5333 | 53276 | 20481 | 15163 | 94253 |
ctr-miR166 | UCGGACCAGGCUUCAUUCCCCC | 22 | 2 | 18 | 10 | 10 | 40 | |
osa-miR166e | UCGAACCAGGCUUCAUUCCCC | 21 | 0 | 17 | 8 | 4 | 29 | |
vvi-miR166a | UCGGACCAGGCUUCAUUCC | 19 | 93 | 205 | 166 | 382 | 846 | |
zma-miR166h | UCGGACCAGGCUUCAUUCCC | 20 | 140 | 769 | 352 | 630 | 1891 | |
167 | ath-miR167a | UGAAGCUGCCAGCAUGAUCUA | 21 | 661 | 2883 | 3251 | 90 | 6885 |
ath-miR167d | UGAAGCUGCCAGCAUGAUCUGG | 22 | 22003 | 1443 | 5196 | 626 | 29268 | |
bna-miR167a | UGAAGCUGCCAGCAUGAUCUAA | 22 | 2 | 0 | 17 | 0 | 19 | |
ccl-miR167a | UGAAGCUGCCAGCAUGAUCUGA | 22 | 2267 | 8164 | 2727 | 276 | 13434 | |
osa-miR167d | UGAAGCUGCCAGCAUGAUCUG | 21 | 15021 | 20039 | 6209 | 378 | 41647 | |
ptc-miR167f | UGAAGCUGCCAGCAUGAUCUU | 21 | 36 | 252 | 146 | 5 | 439 | |
168 | ath-miR168a | UCGCUUGGUGCAGGUCGGGAA | 21 | 382 | 991 | 605 | 43 | 2021 |
169 | ath-miR169a | CAGCCAAGGAUGACUUGCCGA | 21 | 0 | 11 | 0 | 44 | 55 |
ath-miR169b | CAGCCAAGGAUGACUUGCCGG | 21 | 1339 | 8784 | 154 | 6351 | 16628 | |
gma-miR169d | UGAGCCAAGGAUGACUUGCCGGU | 23 | 0 | 4 | 11 | 0 | 15 | |
gma-miR169e | AGCCAAGGAUGACUUGCCGG | 20 | 133 | 47 | 62 | 316 | 558 | |
mtr-miR169c | CAGCCAAGGGUGAUUUGCCGG | 21 | 3916 | 166 | 78 | 2 | 4162 | |
mtr-miR169d | AAGCCAAGGAUGACUUGCCGG | 21 | 126 | 863 | 389 | 4 | 1382 | |
osa-miR169e | UAGCCAAGGAUGACUUGCCGG | 21 | 1 | 29 | 1 | 16 | 47 | |
171 | ath-miR171b | UUGAGCCGUGCCAAUAUCACG | 21 | 119 | 790 | 0 | 37 | 946 |
sly-miR171d | UUGAGCCGCGCCAAUAUCAC | 20 | 2 | 1 | 67 | 7 | 77 | |
zma-miR171b | UUGAGCCGUGCCAAUAUCAC | 20 | 28 | 40 | 13 | 2 | 83 | |
zma-miR171f | UUGAGCCGUGCCAAUAUCACA | 21 | 62 | 245 | 139 | 68 | 514 | |
172 | ath-miR172a | AGAAUCUUGAUGAUGCUGCAU | 21 | 43 | 38 | 24 | 1 | 106 |
ptc-miR172g | GGAAUCUUGAUGAUGCUGCAG | 21 | 353 | 18985 | 200 | 51 | 19589 | |
sbi-miR172b | GGAAUCUUGAUGAUGCUGCA | 20 | 1 | 193 | 7 | 0 | 201 | |
zma-miR172a | AGAAUCUUGAUGAUGCUGCA | 20 | 344 | 565 | 622 | 36 | 1567 | |
319 | ath-miR319a | UUGGACUGAAGGGAGCUCCCU | 21 | 0 | 1672 | 192 | 320 | 2184 |
mtr-miR319 | UUGGACUGAAGGGAGCUCCC | 20 | 21 | 66392 | 4936 | 40730 | 112079 | |
osa-miR319a | UUGGACUGAAGGGUGCUCCC | 20 | 0 | 19 | 5 | 3 | 27 | |
ppt-miR319a | CUUGGACUGAAGGGAGCUCC | 20 | 1 | 1622 | 14 | 106 | 1743 | |
ppt-miR319c | CUUGGACUGAAGGGAGCUCCC | 21 | 16 | 11934 | 643 | 3082 | 15675 | |
pta-miR319 | UUGGACUGAAGGGAGCUCC | 19 | 0 | 1917 | 201 | 1139 | 3257 | |
ptc-miR319e | UUGGACUGAAGGGAGCUCCU | 20 | 0 | 22 | 58 | 45 | 125 | |
vvi-miR319e | UUUGGACUGAAGGGAGCUCCU | 21 | 0 | 55 | 2 | 1 | 58 | |
vvi-miR319g | UUGGACUGAAGGGAGCUCCCA | 21 | 0 | 285 | 23 | 53 | 361 | |
390 | ath-miR390a | AAGCUCAGGAGGGAUAGCGCC | 21 | 299 | 1264 | 153 | 63 | 1779 |
gma-miR390b | AAGCUCAGGAGGGAUAGCACC | 21 | 46 | 25 | 193 | 124 | 388 | |
393 | ath-miR393a | UCCAAAGGGAUCGCAUUGAUCC | 22 | 51 | 295 | 441 | 9 | 796 |
osa-miR393 | UCCAAAGGGAUCGCAUUGAUC | 21 | 13 | 65 | 101 | 0 | 179 | |
394 | ath-miR394a | UUGGCAUUCUGUCCACCUCC | 20 | 71 | 7473 | 339 | 482 | 8365 |
vvi-miR394a | UUGGCAUUCUGUCCACCUCCAU | 22 | 0 | 112 | 7 | 0 | 119 | |
395 | tae-miR395b | UGAAGUGUUUGGGGGAACUC | 20 | 5 | 25 | 4 | 8 | 42 |
396 | ath-miR396a | UUCCACAGCUUUCUUGAACUG | 21 | 760 | 44655 | 10489 | 601 | 56505 |
ath-miR396b | UUCCACAGCUUUCUUGAACUU | 21 | 1 | 185 | 33 | 16 | 235 | |
gma-miR396d | AAGAAAGCUGUGGGAGAAUAUGGC | 24 | 0 | 61 | 22 | 77 | 160 | |
gma-miR396e | UUCCACAGCUUUCUUGAACUGU | 22 | 0 | 29 | 6 | 0 | 35 | |
ptc-miR396f | UUCCACGGCUUUCUUGAACUG | 21 | 0 | 11 | 4 | 1 | 16 | |
vvi-miR396a | UUCCACAGCUUUCUUGAACUA | 21 | 0 | 23 | 2 | 1 | 26 | |
vvi-miR396b | UUCCACAGCUUUCUUGAACU | 20 | 742 | 19924 | 2108 | 823 | 23597 | |
397 | ath-miR397a | UCAUUGAGUGCAGCGUUGAUG | 21 | 2057 | 13 | 5276 | 70 | 7416 |
zma-miR397a | UCAUUGAGCGCAGCGUUGAUG | 21 | 5 | 0 | 23 | 0 | 28 | |
398 | ahy-miR398 | UGUGUUCUCAGGUCACCCCU | 20 | 0 | 25 | 350 | 0 | 375 |
osa-miR398b | UGUGUUCUCAGGUCGCCCCUG | 21 | 3760 | 57 | 1717 | 7 | 5541 | |
399 | ath-miR399a | UGCCAAAGGAGAUUUGCCCUG | 21 | 15 | 12 | 4 | 0 | 31 |
ath-miR399b | UGCCAAAGGAGAGUUGCCCUG | 21 | 35 | 121 | 22 | 2 | 180 | |
osa-miR399e | UGCCAAAGGAGAUUUGCCCAG | 21 | 49 | 45 | 3 | 1 | 98 | |
408 | ath-miR408 | AUGCACUGCCUCUUCCCUGGC | 21 | 2083 | 3718 | 9050 | 167 | 15018 |
bdi-miR408 | AUGCACUGCCUCUUCCCUGG | 20 | 5 | 25 | 67 | 0 | 97 | |
osa-miR408 | CUGCACUGCCUCUUCCCUGGC | 21 | 3 | 5 | 17 | 0 | 25 | |
ppt-miR408b | UGCACUGCCUCUUCCCUGGCU | 21 | 0 | 5 | 55 | 0 | 60 | |
482 | gso-miR482a | UCUUCCCUACACCUCCCAUAC | 21 | 7 | 318 | 85 | 2 | 412 |
pvu-miR482 | UCUUCCCAAUUCCGCCCAUUCC | 22 | 5 | 291 | 54 | 0 | 350 | |
1511 | gma-miR1511 | AACCAGGCUCUGAUACCAUG | 20 | 978 | 625 | 449 | 1529 | 3581 |
1514 | pvu-miR1514a | UUCAUUUUGAAAAUAGGCAUUG | 22 | 188 | 5481 | 1282 | 311 | 7262 |
1515 | gma-miR1515 | UCAUUUUGCGUGCAAUGAUCUG | 22 | 27 | 853 | 341 | 86 | 1307 |
2111 | ath-miR2111a | UAAUCUGCAUCCUGAGGUUUA | 21 | 48 | 211 | 255 | 0 | 514 |
2118 | mtr-miR2118 | UUACCGAUUCCACCCAUUCCUA | 22 | 8 | 7 | 1 | 1 | 17 |
pvu-miR2118 | UUGCCGAUUCCACCCAUUCCUA | 22 | 238 | 17300 | 13707 | 1771 | 33016 | |
2119 | gma-miR2119 | UCAAAGGGAGUUGUAGGGGAA | 21 | 85 | 42 | 1448 | 6 | 1581 |