Table 5 MiRNA isoforms from P.vulgaris
From: Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing
Variant group | Reference miRNA | Sequence (5'- 3') | Length (nt) | Reads | ||||
|---|---|---|---|---|---|---|---|---|
LL | FL | RL | SL | Total | ||||
Length variants | gma-miR1511 | AACCAGGCTCTGATACCATG | 20 | 978 | 625 | 449 | 1529 | 3581 |
pvu-isomiR 1511 | AACCAGGCTCTGATACCATGA | 21 | 14902 | 13725 | 7707 | 17239 | 53573 | |
gso-miR482a | TCTTCCCTACACCTCCCATAC | 21 | 7 | 318 | 85 | 2 | 412 | |
pvu-isomiR 482a | TCTTCCCTACACCTCCCATACC | 22 | 369 | 17616 | 5564 | 305 | 23854 | |
mtr-miR171c | TGATTGAGCCGTGCCAATATT | 21 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR 171a | TGATTGAGCCGTGCCAATA | 19 | 115 | 1390 | 60 | 57 | 1622 | |
pvu-miR482* | GGAATGGGCTGATTGGGAAGCA | 22 | 1185 | 6 | 440 | 10 | 1641 | |
pvu-isomiR 482* | GGAATGGGCTGATTGGGAAGC | 21 | 714044 | 3806 | 173153 | 1 | 1207244 | |
pvu-miR159a.2 | CTTCCATATCTGGGGAGCTTC | 21 | 1 | 0 | 0 | 0 | 1 | |
pvu-isomiR 159a | CTTCCATATCTGGGGAGCT | 19 | 13 | 263 | 157 | 23 | 456 | |
gma-miR4376 | TACGCAGGAGAGATGACGCTGT | 22 | 1 | 1 | 0 | 0 | 2 | |
pvu-isomiR 4376 | TACGCAGGAGAGATGACGCTG | 21 | 3841 | 1090 | 0 | 398 | 5329 | |
mtr-miR171b | TGATTGAGCCGCGTCAATATC | 21 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR171b | TC TGATTGAGCCGCGTCAATA | 21 | 101 | 1 | 79 | 10 | 191 | |
Non conserved variants | ath-miR858 | TTTCGTTGTCTGTTCGACCTT | 21 | 0 | 0 | 0 | 0 | 0 |
pvu-isomiR 858 | C TCGTTGTCTGTTCGACCTTG | 21 | 37 | 351 | 0 | 26 | 414 | |
csi-miR479 | TGTGATATTGGTTCGGCTCATC | 22 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR479 | TGTGATATTGGTTT GGCTCA | 20 | 58 | 1 | 1588 | 11 | 1658 | |
gma-miR1510a-3p | TTGTTGTTTTACCTATTCCACC | 22 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR1510a | TGTTGTTTTT CCTATTCCACC | 21 | 463 | 877 | 902 | 28 | 2270 | |
gma-miR1510b | TGTTGTTTTACCTATTCCACC | 21 | 0 | 0 | 4 | 0 | 4 | |
pvu-isomiR1510b | TTGTTTTT CCTATTCCACCAA | 21 | 3313 | 17893 | 8413 | 222 | 29841 | |
mtr-miR2199 | TGATACACTAGCACGGATCAC | 21 | 8 | 0 | 0 | 0 | 8 | |
pvu-isomiR 2199a | TGATACACTAGCACGGG TCAC | 21 | 16 | 1323 | 799 | 59 | 2197 | |
pvu-isomiR 2199b | TGATACACTAGT ACGGATCAC | 21 | 2586 | 0 | 0 | 5 | 2591 | |
mtr-miR2597 | TTTGGTACTTCGTCGATTTGA | 21 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR2597 | TTTGGTACTTCC TT GATTTGA | 21 | 0 | 22 | 253 | 0 | 275 | |
ppt-miR894 | CGTTTCACGTCGGGTTCACC | 20 | 1 | 3 | 1 | 0 | 5 | |
pvu-isomiR894 | CGTTTCACGTCA GGTTCACCA | 21 | 15 | 6 | 0 | 0 | 21 | |
pta-miR1310 | GGCATCGGGGGCGTAACGCCCCT | 23 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR1310 | GGCATCGGGGGCGC AACGCCC | 21 | 33 | 5 | 0 | 0 | 38 | |
Conserved variants | ctr-miR166a | TCGGACCAGGCTTCATTCCCCC | 22 | 2 | 18 | 10 | 10 | 40 |
pvu-isomiR166a | TCGGACCAGGCTTCC TTCCCC | 21 | 113 | 371 | 241 | 63 | 788 | |
osa-miR156l | CGACAGAAGAGAGTGAGCATA | 21 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR 156a | T GACAGAAGAGAGTGAGCA | 19 | 2682 | 7 | 334 | 222 | 3245 | |
mtr-miR164d | TGGAGAAGCAGGGCACATGCT | 21 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR164a | TGGAGAAGCAGGA CACATGC | 20 | 58 | 64 | 535 | 12 | 669 | |
vvi-miR156e | TGACAGAGGAGAGTGAGCAC | 20 | 30 | 0 | 1 | 1 | 32 | |
pvu-isomiR 156b | TGACAGAC GAGAGTGAGCAC | 20 | 261 | 0 | 2 | 2 | 265 | |
csi-miR393 | ATCCAAAGGGATCGCATTGATC | 22 | 1 | 0 | 0 | 0 | 1 | |
pvu-isomiR393 | T TCCAAAGGGATCGCATTGA | 20 | 911 | 581 | 667 | 4 | 2163 | |
ctr-miR171 | TTGAGCCGCGTCAATATCTCC | 21 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR171c | TTGAGCCGCGTCAATATCTCA | 21 | 30 | 151 | 129 | 58 | 368 | |
mtr-miR169p | TGAGCCAGGATGGCTTGCCGG | 21 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR169a | TGAGCCG GGATGGCTTGCCGG | 21 | 2 | 228 | 26 | 97 | 353 | |
ptc-miR396f | TTCCACGGCTTTCTTGAACTG | 21 | 0 | 11 | 4 | 1 | 16 | |
pvu-isomiR396a | TTCCACC GCTTTCTTGAACTG | 21 | 11 | 10 | 3 | 0 | 24 | |
zma-miR398a | TGTGTTCTCAGGTCGCCCCCG | 21 | 2 | 0 | 2 | 0 | 4 | |
pvu-isomiR398a | TGTGTTCTCAGGC CGCCCCT G | 21 | 21 | 0 | 18 | 0 | 39 | |
sly-miR171c | TATTGGTGCGGTTCAATGAGA | 21 | 0 | 0 | 0 | 0 | 0 | |
pvu-isomiR171d | TATTGGTC CGGTTCAATGAGA | 21 | 353 | 386 | 0 | 192 | 931 | |