Table 3 The enriched pathways in common carp identified by KOBAS (corrected p-value < 0.05)
KEGG pathway | ID | Common carp contigs proportion | Zebrafish gene proportion | Biological process GO term (level 2)* |
|---|---|---|---|---|
Protein digestion and absorption | ko04974 | 547/10308 | 126/7433 | multicellular organismal process |
Glycolysis/Gluconeogenesis | ko00010 | 358/10308 | 76/7433 | metabolic process |
Pancreatic secretion | ko04972 | 564/10308 | 172/7433 | Localization |
Complement and coagulation cascades | ko04610 | 360/10308 | 105/7433 | immune system process |
Starch and sucrose metabolism | ko00500 | 243/10308 | 56/7433 | metabolic process |
Oxidative phosphorylation | ko00190 | 415/10308 | 139/7433 | metabolic process |
Antigen processing and presentation | ko04612 | 278/10308 | 85/7433 | immune system process |
Pyruvate metabolism | ko00620 | 175/10308 | 47/7433 | metabolic process |
TCA cycle | ko00020 | 149/10308 | 36/7433 | metabolic process |
Pentose phosphate pathway | ko00030 | 134/10308 | 31/7433 | cellular process |
RNA transport | ko03013 | 352/10308 | 162/7433 | Localization |
Mineral absorption | ko04978 | 134/10308 | 43/7433 | developmental process |
PPAR signaling pathway | ko03320 | 232/10308 | 96/7433 | response to stimulus |
Protein processing in endoplasmic reticulum | ko04141 | 400/10308 | 215/7433 | cellular process |
Ribosome biogenesis in eukaryotes | ko03008 | 113/10308 | 42/7433 | cellular component biogenesis |
RNA degradation | ko03018 | 153/10308 | 77/7433 | metabolic process |