Bacteria | Computational discovery method | Verification method | Number of sRNAs | Reference | ||
---|---|---|---|---|---|---|
 |  |  | Predicted | Tested | Verified |  |
Escherichia coli | QRNA | Northern blot | 275 | 49 | 11 | [64] |
Escherichia coli | Pftools2.2 & RNAMotif | Northern blot | 227 | 8 | 7 | [65] |
Burkholderia cenocepacia | QRNA | Microarray | 3,441 | 213 | 4 | [39] |
Streptomyces coelicolor | BLAST & TransTermHP | RT-PCR & microarray | 37 | 32 | 20 | [66] |
Synechocystis PCC6803 | RNAz | Northern blot | 383 | 2 | 2 | [67] |
Staphylococcus aureus | RNAsim | Northern blot | 774 | 36 | 11 | [68] |
Escherichia coli | Anonymous program | Northern blot | 601 | 6 | 3 | [69] |
Salmonella enterica Typhimurium | sRNAscanner | Northern blot | 156 | 16 | 6 | [46] |
Streptomyces coelicolor | RNAz & nocoRNAc | Microarray | 843 | 403 | 317 | [47] |
Burkholderia pseudomallei | SIPHT, sRNAscanner & Rfam_scan | RT-PCR | 1306 | 15 | 8 | This study. |