Code | Examples* | Contigs | Singlets | Total | |
---|---|---|---|---|---|
Consensus (REF/SC/J5) | Underlying bases | ||||
H-A1 | G/G/R | g | g | g | 35756 | 4110 | 39866 |
| | a | |||||
H-A2 | G/A/R | g | a | a | 1145 | 245 | 1390 |
| | g | |||||
H-A3 | K/G/K | g | g | g | 930 | 0 | 930 |
t | | t | |||||
H-A4 | K/G/R | g | g | g | 28 | 0 | 28 |
t | | a | |||||
H-A5 | G/T/R | g | t | g | 1 | 10 | 11 |
| | a | |||||
H-A6 | Y/C/K | c | | g | 10 | 0 | 10 |
t | | t | |||||
H-A7 | C/T/K | c | | t | 73 | 11 | 84 |
| | g | |||||
H-B1 | G/R/G | g | g | g | 14348 | 1801 | 16149 |
| a | | |||||
H-B2 | Y/Y/C | c | c | c | 2869 | 0 | 2869 |
t | t | | |||||
H-B3 | G/K/T | g | g | t | 9320 | 2149 | 11469 |
| t | | |||||
H-B4 | R/R/C | a | a | c | 5 | 0 | 5 |
g | g | | |||||
H-B5 | G/R/T | g | g | t | 3 | 0 | 3 |
| a | | |||||
H-B6 | M/S/C | c | c | c | 19 | 0 | 19 |
a | g | | |||||
H-B7 | R/S/C | g | g | c | 4 | 0 | 4 |
a | c | | |||||
AH-1 | S/S/R | g | g | g | 91 | 0 | 91 |
c | c | a | |||||
AH-2 | K/W/K | t | | t | 4 | 0 | 4 |
g | a | g | |||||
AH-3 | C/S/M | c | | c | 279 | 43 | 322 |
| g | a | |||||
AH-4 | C/M/R | c | a | a | 245 | 50 | 295 |
| c | g | |||||
AH-5 | C/R/S | c | g | g | 17 | 5 | 22 |
| a | c | |||||
Total | 65147 | 8424 | 73571 |