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Table 3 Clusters of nonrandomly distributed genes in T. atroviride, T. virens and T. reesei that are involved in mycoparasitism

From: Comparative transcriptomics reveals different strategies of Trichodermamycoparasitism

Scaffold

T. atroviride

T. virens

T. reesei

Gene area*

Density**

Gene area*

Density**

Gene area*

Density**

1

44-47

3/4

583-618

6/36

62-68

3/7

 

69-87

7/19

974-990

4/17

129-135

4/7

 

1111-1119

4/9

  

439-452

4/14

 

1331-1340

3/10

  

632-639

3/8

 

1717-1726

3/10

  

734-753

5/20

2

85-93

3/9

3-27

7/25

43-55

4/13

 

306-313

3/8

134-148

3/15

  
 

649-663

6/15

253-274

4/22

  
 

936-942

3/7

665-695

4/31

  
 

998-1000

3/3

    
 

1031-1039

3/9

    
 

1039-1054

6/16

    

3

140-143

4/4

788-792

4/5

4-27

5/24

 

189-201

10/13

  

333-342

3/10

 

691-698

3/8

  

406-411

4/6

 

771-773

3/3

    

4

37-45

4/9

20-24

4/5

34-45

3/12

 

340-349

3/10

242-255

3/14

333-339

3/7

 

593-614

6/20

327-346

3/20

  

5

12 - 24

7/13

252-262

3/11

209-226

4/14

 

97-104

3/8

  

235-248

4/14

 

286-302

5/17

  

448-463

5/16

 

389-412

8/22

    
 

425-427

3/3

    

6

264-268

4/5

2-21

3/20

24-51

6/28

 

354-357

3/4

  

128-139

3/12

 

461-483

7/23

    

7

178-187

4/10

6-9

3/4

59-72

5/14

 

404-408

3/5

  

286-292

3/7

 

484-509

8/26

    
 

524-532

5/9

    
 

546-559

4/14

    

8

117-129

6/13

  

276-290

3/15

 

155-165

6/11

    
 

185-189

3/5

    

9

173-188

6/16

  

26-44

4/19

 

198-212

4/15

    
 

489-498

4/10

    

10

  

242-262

3/21

74-83

3/10

     

185-187

3/3

     

262-272

3/11

     

316-344

5/29

11

399-411

5/13

    
 

462-477

9/16

    

12

386-391

3/6

  

7-11

3/5

 

466-468

3/3

  

160-174

3/15

13

77-85

3/9

277-281

3/5

  
 

132-139

3/8

    
 

275-281

3/7

    
   

219-229

3/11

1-14

3/15

15

20-25

4/6

    
 

169-174

3/6

    

16

55-61

3/7

    

17

78-85

3/8

  

59-86

6/28

 

165-175

4/11

    

18

45-62

6/18

1-7

5/7

  
 

135-138

3/4

    

19

4 of 12

3/9

107-113

4/7

32-37

3/6

 

68-82

6/15

    
 

141-155

4/15

    

20

2-11

5/10

  

94/100

3/7

21

  

21-41

3/21

116-120

4/5

   

100-109

3/10

  

22

  

101-114

4/15

80-109

7/30

24

    

29-41

4/13

26

  

53-63

4/11

  

27

    

40-56

4/17

28

  

32-51

3/20

68-74

3/7

     

98-122

5/25

29

    

68-79

3/12

     

99-113

6/13

32

    

55-62

3/8

34

  

3-13

10/11

26-30

3/5

35

  

32-51

4/20

  

45

    

7-20

3/14

54

  

1-8

5/8

  
  1. * indicates the area on the scaffold in which the cluster was identified, given by the numbers of the first and the last genes on the scaffold. ** the ratio of significantly up- or down-regulated genes to the total number of genes in the cluster.
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BMC Genomics

ISSN: 1471-2164

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