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Table 2 Summary table of mate pair sequence data

From: Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat

Arm

Mate pair library

Total pairs

Read class

 

2 Kb°

3 Kb†

5 Kb†

 

Pairs

Singletons

Unaligned

7BS

2.60*107

2.23*108

1.97*108

4.46*108

71.8%

22.4%

5.9%

7BL

3.13*107

2.32*108

2.16*108

4.79*108

71.2%

23.7%

5.1%

  1. Total numbers of read pairs are given for each MP library. The read pair classification is based on mapping of MP data back to assembled contigs from PE data.
  2. °Roche library, †Illumina library.
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BMC Genomics

ISSN: 1471-2164

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