Table 2 The 50 most abundant transcripts in L. major promastigotes
Transcript | Genea | FPKMb(±SD) | Remarksc |
|---|---|---|---|
LmjF.28.T2770 | LmjF28.2770 | 1357.39 ± 5.12 | heat-shock protein (HSP70; gene HSP70-II) |
LmjF.35.T0240 | LmjF35.0240 | 1034.68 ±12.39 | ribosomal protein L30 |
LmjF.28.T2780 | LmjF28.2780 | 987.24 ± 4.45 | heat-shock protein hsp70 (HSP70; gene HSP70-I) |
LmjF.36.T1940 | LmjF36.1940 | 952.68 ± 4.37 | inosine-guanosine transporter (NT2) |
LmjF.31.T0900 | LmjF31.0900 | 809.07 ± 7.12 | hypothetical protein, conserved |
LmjF.28.T2205 | LmjF28.2205 | 792.33 ± 8.16 | ribosomal protein S29 |
LmjF.35.T2220 | LmjF35.2220 | 780.12 ± 5.99 | kinetoplastid membrane protein-11 (KMP11) |
LmjF.19.T0983 | Non-annotated | 674.85 ± 5.26 | - |
LmjF.35.T0600 | LmjF35.0600 | 672.00 ± 5.81 | ribosomal protein L18a |
LmjF.06.T0010 | LmjF06.0010 | 666.85 ± 8.31 | histone H4 |
LmjF.35.T3800 | LmjF35.3800 | 617.33 ± 7.36 | ribosomal protein L23 |
LmjF.36.T3620 | LmjF36.3620 | 616.48 ± 5.07 | hypothetical protein, conserved |
LmjF.35.T2210 | LmjF35.2210 | 603.26 ± 4.69 | kinetoplastid membrane protein-11 (KMP11) |
LmjF.28.T2460 | LmjF28.2460 | 596.61 ± 6.27 | ribosomal protein S29 |
LmjF.20.T1285 | Non-annotated | 560.05 ± 5.48 | - |
LmjF.31.T0964 | Non-annotated | 539.44 ± 5.07 | - |
LmjF.31.T0895 | Non-annotated | 524.19 ± 10.51 | - |
LmjF.35.T3290 | LmjF35.3290 | 514.13 ± 5.67 | ribosomal protein L31 |
LmjF.13.T0570 | LmjF13.0570 | 496.01 ± 5.02 | ribosomal protein S12 |
LmjF.35.T3790 | LmjF35.3790 | 493.33 ± 8.18 | ribosomal protein L23 |
LmjF.35.T4191 | Non-annotated | 490.94 ± 5.15 | - |
LmjF.35.T3760 | LmjF35.3760 | 483.03 ± 7.04 | ribosomal protein L27A/L29 |
LmjF.30.T3340 | LmjF30.3340 | 482.87 ± 5.89 | ribosomal protein L9 |
LmjF.35.T2050 | LmjF35.2050 | 464.76 ± 5.1 | ribosomal protein L32 |
LmjF.08.T0640 | LmjF08.0640 | 452.92 ± 3.18 | hypothetical protein |
LmjF.14.T0850 | LmjF14.0850 | 451.18 ± 3.65 | calpain-like cysteine peptidase |
LmjF.35.T1910 | LmjF35.1910 | 448.56 ± 5.89 | ribosomal protein L15 |
LmjF.35.T0420 | LmjF35.0420 | 446.58 ± 5.12 | ribosomal protein S3A |
LmjF.35.T1920 | LmjF35.1920 | 446.57 ± 9.14 | ribosomal protein L36 |
LmjF.25.T0910 | LmjF25.0910 | 436.47 ± 3.61 | cyclophilin a |
LmjF.35.T3780 | LmjF35.3780 | 427.63 ± 4.95 | ribosomal protein L27A/L29 |
LmjF.28.T2740 | LmjF28.2740 | 426.82 ± 4.82 | activated protein kinase c receptor |
LmjF.13.T0450 | LmjF13.0450 | 425.12 ± 4.7 | hypothetical protein, conserved |
LmjF.20.T1280 | LmjF20.1280 | 424.16 ± 3.22 | small myristoylated protein 4 |
LmjF.31.T0966 | Non-annotatedd | 419.44 ± 8.52 | hypothetical protein, conserved |
LmjF.28.T2750 | LmjF28.2750 | 414.41 ± 4.15 | activated protein kinase c receptor |
LmjF.31.T1170 | LmjF31.1170 | 414.01 ± 3.8 | hypothetical protein |
LmjF.35.T0410 | LmjF35.0410 | 411.95 ± 4.52 | ribosomal protein S3A |
LmjF.15.T1240 | LmjF15.1240 | 410.71 ± 3.38 | nucleoside transporter 1 |
LmjF.24.T2230 | LmjF24.2230 | 409.67 ± 3.11 | hypothetical predicted multi-pass transmembrane protein |
LmjF.35.T3280 | LmjF35.3280 | 406.24 ± 5.44 | ribosomal protein L31 |
LmjF.35.T0400 | LmjF35.0400 | 403.61 ± 4.43 | ribosomal protein S3A |
LmjF.24.T1280 | LmjF24.1280 | 403.46 ± 3.63 | amastin-like surface protein |
LmjF.13.T0370 | LmjF13.0370 | 403.05 ± 3.84 | alpha tubulin |
LmjF.35.T1670 | LmjF35.1670 | 403.05 ± 6.46 | ribosomal protein L26 |
LmjF.13.T0360 | LmjF13.0360 | 403.04 ± 3.84 | alpha tubulin |
LmjF.13.T0350 | LmjF13.0350 | 399.2 ± 3.82 | alpha tubulin |
LmjF.13.T0380 | LmjF13.0380 | 399.06 ± 3.82 | alpha tubulin |
LmjF.33.T3230 | LmjF33.3230 | 396.93 ± 7.5 | ribosomal protein L44 |
LmjF.13.T0330 | LmjF13.0330 | 396.86 ± 3.81 | alpha tubulin |