Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs

BMC Genomics

Table 1 Basic sORF characteristics

Chromosome	Length (bp)	Total number of sORFs	One sORF per number of bps (bp)	Number of sORFs with high coding potential (sORFfinder)	One high coding sORF per number of bps (bp)
1	197,195,432	3,070,032	128	160,770	2,453
2	181,748,087	2,830,394	128	176,654	2,058
3	159,599,783	2,507,691	127	124,217	2,570
4	155,630,120	2,385,489	130	155,419	2,003
5	152,537,259	2,335,678	131	158,789	1,921
6	149,517,037	2,342,614	128	130,505	2,291
7	152,524,553	2,235,697	136	146,314	2,085
8	131,738,871	1,990,727	132	134,093	1,965
9	124,076,172	1,910,809	130	126,743	1,958
10	129,993,255	2,024,292	128	121,848	2,134
11	121,843,856	1,845,184	132	142,610	1,709
12	121,257,530	1,875,766	129	109,403	2,217
13	120,284,312	1,867,333	129	108,919	2,209
14	125,194,864	1,959,570	128	102,912	2,433
15	103,494,974	1,599,415	129	101,315	2,043
16	98,319,150	1,528,958	129	81,787	2,404
17	95,272,651	1,441,669	132	102,617	1,857
18	90,772,031	1,404,482	129	80,524	2,255
19	61,342,430	912,412	134	65,280	1,879
X	166,650,296	2,594,439	128	82,073	4,061
Y	15,902,555	41,696	762	1,566	20,310
Total	2,654,895,218	40,704,347	130	2,414,358	2,199

Overview of putatively coding sORFs grouped by Mus musculus chromosomes, showing the total number and the distribution of sORFs for each chromosome, as well as the number and distribution of sORFs with high coding potential according to sORFfinder.

ISSN: 1471-2164