Table 1 Theridion californicum and T. grallator transcriptome sequencing and assembly statistics
Input | T. californicum | T. californicum | T. grallator | T. grallator |
|---|---|---|---|---|
“Yellow” | “Colored” | “Yellow” | “Colored” | |
Initial reads 1 RNA-seq | 165,289,830 | 166,918,608 | 219,423,001 | 297,051,726 |
Initial reads 1 ncDNA | 111,126,430 | 102,037,432 | 241,426,000 | 187,430,684 |
Total initial reads 1 | 276,416,260 | 268,956,040 | 460,849,001 | 484,482,410 |
Preprocessed reads | 141,712,102 | 109,218,670 | 88,114,377 | 151,149,116 |
Combined reads | 250,930,772 | 239,263,493 | ||
Reads entering assembly 2 | 171,894,396 | 168,943,057 | ||
Inchworm K mers | 885,888,079 | 820,735,751 | ||
Chrysalis contigs | 5,658,477 | 6,140,420 | ||
Butterfly contigs | 128,391 (389,967)3 | 104,481 (459,452) | ||
Butterfly components (“Genes”) | 83,701 (295,585) | 89,166 (427,020) | ||
Mean contig length (bp) | 606 (289) | 601 (235) | ||
Median contig length (bp) | 344 (152) | 332 (130) | ||
N50 contig length (bp) | 901 (429) | 926 (273) | ||
Mean coverage depth (reads) 4 | 2284 (1722) | 4493 (3001) | ||
Median coverage depth (reads) | 99 (33) | 329 (45) | ||
Maximum transcript length (bp) | 24,235 | 17,866 | ||