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Table 3 Eight potential CT26 mutation antigens that are in genes expressed in CT26 and in epitopes predicted to bind MHC class I molecules based on IEDB consensus ranks

From: Immunomic, genomic and transcriptomic characterization of CT26 colorectal carcinoma

Gene

Mutation

Epitope

MHC allele

Csnk1g3

N42K

VGPKFRVGKK

H-2Dd

E2f8

I522T

TYLQPAQAQM

H-2Kd

Fam111a

G213E

CVYGFKEETI

H-2Dd

Hdac2

P228S

KYYAVNFM

H-2Kd

Nudt19

L335F

IYMTFPSENK

H-2Kd

Phf3

G1814E

FPPQNMFEF

H-2Dd

Smc3

D733A

KFKASRASI

H-2Kd

  1. The bold letters signify the mutated amino acid.
  2. dThe official names of mouse MHC alleles.
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BMC Genomics

ISSN: 1471-2164

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