Table 2 mtSNPs association with KEGG pathways and modules in stool and posterior fornix samples
From: mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities
Sample origin | SNP | Allele frequency | Rare SNP? | Location | Codon | p-value | q-value | Pathway/module associated |
|---|---|---|---|---|---|---|---|---|
Stool WGS | ||||||||
|  | C3333T | 0.073 | Y | ND1 | Leu- > Leu | 0.0001 | 0.026 | ko00360: Phenylalanine_metabolism |
G11914A | 7.87 | N | ND4 | Thr- > Thr | 0.0001 | 0.014 | M00335: Sec(secretion) System | |
Posterior fornix WGS | ||||||||
|  | T6776C | 2.55 | N | COI | His- > His | 0.0005 | 0.049 | ko00071: Fatty acid metabolism |
| Â | A15924G | 3.92 | N | tRNAThr | N/A | 0.0001 | 0.003 | M00193: Putative spermidine/ putrescine transport |