SNP Discovery for mapping alien introgressions in wheat

BMC Genomics

Table 1 SNPs derived by comparing 5M ^g S sequences based on reads mapped on the 5AS, 5BS and 5DS reference sequence assemblies from the IWGSC

Reference assemblies	Mapped reads	Raw SNPs	Filtered SNPs	Genic SNPs
5AS	45,989,152	976,754	277,770	35,749
5BS	35,168,202	675,007	203,522	31,526
5DS	38,012,773	851,722	355,765	11,704

ISSN: 1471-2164