Table 2 A summary of identified high-quality SNVs (coverage > 8) between, DA/K and DA/O, DA/K and PVG and DA/O and E3 and the distribution of SNVs across genomic features
|  | DA/O≠DA/K | DA/O≠E3 | DA/K≠PVG | DA/O+/K≠E3=PVG | BN≠DA/O+/K+E3+PVG |
|---|---|---|---|---|---|
Stop gained | 1 | 48 | 37 | 22 | 10 |
Stop lost | 0 | 3 | 2 | 1 | 2 |
Non-synonymous | 108 | 3688 | 3374 | 1628 | 1437 |
Synonymous | 224 | 7398 | 7546 | 3193 | 2770 |
Essential splice site | 1 | 41 | 36 | 23 | 20 |
splice site | 21 | 1013 | 973 | 451 | 401 |
5’prime UTR | 21 | 644 | 692 | 270 | 231 |
3’ prime UTR | 113 | 4761 | 4481 | 2029 | 1860 |
Intronic | 13949 | 436591 | 347893 | 180040 | 171296 |
Uppstream | 1322 | 49342 | 40423 | 19954 | 18148 |
Downstream | 1215 | 41414 | 34053 | 16472 | 14919 |