| | Corea | Accessory |
|---|
Avg (range) | Avg (range) |
|---|
Size (kbp) | 5,844 | 727 (430 – 1,192) |
% of total genome | 89.7 (86.4 – 93.3) | 11.1 (6.9 – 18.0) |
Average G + C % | 67.0 | 61.2 (60.5 – 62.2) |
Total # of genesb | 5,316 | 608 (348 – 1,090) |
Gene length (bp) | 990 (72 – 13,029) | 939 (51 – 17,019) |
Overlapping genesc (%) | 28.3 | 33.8 (26.3 – 40.7) |
Transposasesd | 7 | 6 (3 – 14) |
Type I integron genese | 0 | 2 (0 – 10) |
ICE-associated genesf | 5 | 127 (4 – 192) |
Predicted phage genesg | 18 | 124 (19 – 271) |
- aCore genome defined as that sequence present in ≥90% of the twelve reference genomes, using PA14 as the primary reference sequence and PAO1 as the secondary reference.
- bNumber of annotated coding sequences.
- cPercentage of coding sequences sharing at least 1 base with a neighboring coding sequence.
- dCoding sequences with homology to proteins labeled as transposases or inactivated derivatives in COG database.
- eGenes flanked by sul1 and intI1 homologs inclusive of these two genes.
- fGenes with homologs in ICEberg protein database.
- gGenes contained within intact, questionable, and incomplete prophage regions predicted by PHAST.
