Table 1 Summary of POLY analyses of upstream and downstream gene-flanking sequences in Apicomplexan parasites
Organism | Fractioni | Maximum length observed Nmaxobs | Maximum length expected Mmaxexp | Proportionment ( P) | Threshold (R > 0.5) | SlopeR1 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | A | C | G | T | A | C | G | T | A | C | G | T | A | C | G | T | A | C | G | T | A | C | G | T |
Upstream | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
P.falciparum | 0.43 | 0.06 | 0.07 | 0.44 | 444 | 9 | 9 | 43 | 18 | 5 | 5 | 19 | 2.44 | 1.80 | 1.80 | 2.26 | 10 | 3 | 4 | 10 | 0.31 | 0.72 | 0.74 | 0.29 |
P.knowlesi | 0.30 | 0.19 | 0.18 | 0.31 | 46 | 17 | 17 | 47 | 13 | 9 | 9 | 13 | 3.54 | 1.89 | 1.89 | 3.62 | 7 | 5 | 5 | 7 | 0.46 | 0.49 | 0.48 | 0.44 |
P.vivax | 0.27 | 0.22 | 0.21 | 0.29 | 35 | 17 | 16 | 36 | 12 | 10 | 10 | 12 | 2.92 | 1.70 | 1.60 | 3.00 | 6 | 5 | 5 | 6 | 0.47 | 0.36 | 0.35 | 0.45 |
P.yoelii | 0.42 | 0.10 | 0.12 | 0.36 | 35 | 10 | 7 | 32 | 18 | 7 | 7 | 16 | 1.94 | 1.43 | 1.00 | 2.00 | 10 | 4 | 5 | 8 | 0.32 | 0.57 | 0.40 | 0.32 |
P.berghei | 0.39 | 0.10 | 0.10 | 0.40 | 23 | 10 | 7 | 24 | 16 | 6 | 6 | 16 | 1.44 | 1.67 | 1.17 | 1.50 | 8 | 4 | 4 | 8 | 0.25 | 0.57 | 0.48 | 0.23 |
C.hominis | 0.36 | 0.14 | 0.15 | 0.35 | 18 | 9 | 9 | 18 | 14 | 7 | 7 | 13 | 1.29 | 1.29 | 1.29 | 1.38 | 9 | 5 | 6 | 8 | 0.24 | 0.46 | 0.39 | 0.26 |
C.parvum | 0.37 | 0.13 | 0.14 | 0.36 | 22 | 9 | 10 | na2 | 14 | 7 | 7 | na | 1.57 | 1.29 | 1.43 | na | 9 | 5 | 5 | na | 0.26 | 0.45 | 0.47 | na |
C.muris | 0.36 | 0.13 | 0.14 | 0.37 | 20 | 10 | 11 | 21 | 14 | 7 | 7 | 14 | 1.43 | 1.43 | 1.57 | 1.50 | 10 | 6 | 6 | 10 | 0.30 | 0.60 | 0.67 | 0.30 |
T.gondii | 0.23 | 0.26 | 0.26 | 0.25 | 13 | 17 | 17 | na | 11 | 12 | 12 | na | 1.18 | 1.42 | 1.42 | na | 6 | 10 | 10 | na | 0.08 | 0.29 | 0.29 | na |
N.caninum | 0.22 | 0.27 | 0.26 | 0.25 | 11 | 20 | 21 | 11 | 10 | 12 | 12 | 11 | 1.10 | 1.67 | 1.75 | 1.00 | 5 | 10 | 10 | 6 | 0.14 | 0.47 | 0.51 | 0.10 |
B.bovis | 0.31 | 0.19 | 0.20 | 0.30 | 9 | 7 | 7 | 10 | 12 | 8 | 8 | 12 | 0.75 | 0.88 | 0.88 | 0.83 | na | na | na | na | na | na | na | na |
T.annulata | 0.37 | 0.13 | 0.13 | 0.37 | 11 | 6 | 6 | 11 | 14 | 6 | 7 | 14 | 0.79 | 1.00 | 0.86 | 0.79 | na | 4 | 7 | na | na | na | na | na |
T.parva | 0.36 | 0.14 | 0.15 | 0.35 | 9 | 6 | 6 | 9 | 14 | 7 | 7 | 13 | 0.64 | 0.86 | 0.86 | 0.69 | na | 5 | na | na | na | na | na | na |
Downstream | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
P.falciparum | 0.41 | 0.07 | 0.07 | 0.44 | 43 | 7 | 8 | 45 | 17 | 5 | 5 | 18 | 2.53 | 1.40 | 1.60 | 2.50 | 10 | 4 | 4 | 10 | 0.32 | 0.59 | 0.63 | 0.29 |
P.knowlesi | 0.29 | 0.19 | 0.19 | 0.33 | 42 | 16 | 16 | 44 | 12 | 9 | 8 | 13 | 3.50 | 1.78 | 2.00 | 3.38 | 6 | 5 | 5 | 7 | 0.46 | 0.49 | 0.48 | 0.44 |
P.vivax | 0.26 | 0.23 | 0.22 | 0.29 | 32 | 15 | 16 | 32 | 11 | 10 | 10 | 11 | 2.91 | 1.50 | 1.60 | 2.91 | 6 | 5 | 5 | 6 | 0.50 | 0.39 | 0.40 | 0.45 |
P.yoelii | 0.38 | 0.12 | 0.11 | 0.39 | 33 | 9 | 8 | 31 | 15 | 6 | 6 | 16 | 2.20 | 1.50 | 1.33 | 1.94 | 8 | 4 | 4 | 8 | 0.33 | 0.45 | 0.34 | 0.31 |
P.berghei | 0.38 | 0.11 | 0.10 | 0.41 | 24 | 7 | 9 | 22 | 14 | 6 | 6 | 16 | 1.71 | 1.17 | 1.50 | 1.38 | 8 | 4 | 4 | 8 | 0.25 | 0.34 | 0.50 | 0.22 |
C.hominis | 0.35 | 0.14 | 0.13 | 0.38 | 13 | 7 | 7 | 16 | 12 | 6 | 6 | 13 | 1.08 | 1.17 | 1.17 | 1.23 | 9 | 6 | 6 | 9 | 0.20 | 0.42 | 0.49 | 0.20 |
C.parvum | 0.35 | 0.13 | 0.13 | 0.39 | 15 | 7 | 7 | 19 | 12 | 6 | 6 | 14 | 1.25 | 1.17 | 1.17 | na | 9 | 6 | 5 | 9 | 0.21 | 0.37 | 0.36 | 0.21 |
C.muris | 0.37 | 0.12 | 0.12 | 0.39 | 17 | 6 | 7 | 18 | 13 | 6 | 6 | 14 | 1.31 | 1.00 | 1.17 | 1.29 | 10 | 5 | 6 | 11 | 0.30 | 0.65 | 0.50 | 0.26 |
T.gondii | 0.25 | 0.25 | 0.25 | 0.25 | 11 | 15 | 17 | 11 | 11 | 11 | 11 | 12 | 1.00 | 1.36 | 1.55 | na | 7 | 10 | 10 | 7 | 0.06 | 0.43 | 0.47 | 0.01 |
N.caninum | 0.24 | 0.25 | 0.27 | 0.24 | 11 | 21 | 24 | 11 | 11 | 11 | 12 | 11 | 1.00 | 1.91 | 2.00 | 1.00 | 6 | 10 | 10 | 6 | 0.11 | 0.54 | 0.51 | 0.11 |
B.bovis | 0.30 | 0.19 | 0.19 | 0.31 | 9 | 7 | 7 | 8 | 11 | 8 | 8 | 11 | 0.82 | 0.88 | 0.88 | 0.73 | na | na | na | na | na | na | na | na |
T.annulata | 0.36 | 0.12 | 0.13 | 0.38 | 10 | 7 | 6 | 9 | 13 | 6 | 6 | 13 | 0.77 | 1.17 | 1.00 | 0.69 | na | 5 | na | na | na | na | na | na |
T.parva | 0.35 | 0.13 | 0.14 | 0.38 | 9 | 7 | 6 | 9 | 12 | 6 | 6 | 13 | 0.75 | 1.17 | 1.00 | 0.69 | na | 5 | na | na | na | na | na | na |