Contigs cotton | Gene symbol | TAIR annotation | SubjectID | logFold change | Adjusted P-value |
---|---|---|---|---|---|
GO:0010200 - Response to chitin | |||||
contig7179* | Protein kinase family protein with leucine-rich repeat domain | AT5g25930 | 2.02 | 5.33E-09 | |
contig14965 | Kin3 | Encodes a putative serine/threonine-specific protein kinase | AT2g17220 | 2.03 | 1.20E-08 |
contig21694 | Protein kinase superfamily | AT1g18390 | 2.65 | 5.45E-10 | |
contig2968 | CPK28 | Member of Calcium Dependent Protein Kinase | AT5g66210 | 2.47 | 0.01 |
contig17371 | CCR4 | Serine/threonine-protein kinase-like domain | AT5g47850 | 3.51 | 0 |
contig2100 | MAPK3 | Encodes a mitogen-activated kinase | AT5g57510 | 4.27 | 8.61E-07 |
contig2102 | MAPK3 | Encodes a mitogen-activated kinase | AT3g45640 | 2.17 | 2.57E-10 |
contig14909 | MKK9 | Member of MAP Kinase Kinase family | AT1g73500 | 2.22 | 1.58E-10 |
contig7892 | MAPKKK14 | Member of MEKK subfamily | AT2g30040 | 2.96 | 4.79E-11 |
contig4523 | ATPase E1-E2 type family protein/haloacid dehalogenase-like hydrolase family protein | AT3g63380 | 3.3 | 0 | |
contig11388 | ATPase E1-E2 type family protein/haloacid dehalogenase-like hydrolase family protein | AT3g63380 | 2.2 | 7.24E-11 | |
contig18754 | ATPase E1-E2 type family protein/haloacid dehalogenase-like hydrolase family protein | AT3g63380 | 2.15 | 3.53E-09 | |
contig7822 | CML38 | Calmodulin-like 38 (CML38) | AT1g76650 | 4.87 | 1.56E-06 |
contig7823 | CML38 | Calmodulin-like 38 (CML38) | AT1g76650 | 3.32 | 0 |
contig535 | CML24 | Encodes a protein with 40% similarity to calmodulin | AT5g37770 | 3.48 | 0 |
contig2687 | C2 calcium-dependent membrane targeting | AT2g25460 | 4.02 | 0 | |
contig12364 | Calcium-binding EF-hand family protein | AT4g27280 | 4.1 | 0 | |
contig2688 | C2 calcium-dependent membrane targeting | AT2g25460 | 3.89 | 1.72E-11 | |
contig14266* | ACA2 | Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum | AT4g37640 | 2.17 | 2.26E-10 |
contig2595* | ACA2 | Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum | AT4g37640 | 2.15 | 7.16E-10 |
contig8294* | EDA39 | Encodes a calmodulin-binding protein involved in stomatal movement | AT4g33050 | 2.61 | 3.93E-12 |
contig1798 | PUMP5 | Encodes one of the mitochondrial dicarboxylate carriers (DIC) | AT2g22500 | 6.13 | 0 |
contig9093* | Encodes a cell wall bound peroxidase | AT5g64120 | 3.76 | 4.46E-14 | |
contig9094* | Encodes a cell wall bound peroxidase | AT5g64120 | 3.42 | 0 | |
contig8534* | DMR6 | Encodes a putative 2OG-Fe(II) oxygenase | AT5g24530 | 2.25 | 1.53E-06 |
contig1723* | Protein phosphatase 2C family protein | AT4g33920 | 3.07 | 7.56E-13 | |
contig1722* | Protein phosphatase 2C family protein | AT4g33920 | 2.7 | 1.53E-14 | |
contig1720* | Protein phosphatase 2C family protein | AT4g33920 | 2.32 | 4.51E-07 | |
contig8378 | Acyl-CoA N-acyltransferases (NAT) superfamily protein | AT2g32030 | 4.48 | 0 | |
contig24379* | PLA/PLA2A | Encodes a lipid acyl hydrolase | AT2g26560 | 3.15 | 0 |
contig11992 | Alpha/beta-Hydrolases superfamily protein | AT3g19970 | 3.13 | 1.89E-10 | |
contig1674 | TCH4 | Encodes a cell wall-modifying enzyme | AT5g57560 | 5.84 | 9.62E-12 |
contig2539 | TCH4 | Encodes a cell wall-modifying enzyme | AT5g57560 | 5.57 | 0 |
contig1676 | TCH4 | Encodes a cell wall-modifying enzyme | AT5g57560 | 4.66 | 0 |
contig2101 | TCH4 | Encodes a cell wall-modifying enzyme | AT5g57560 | 4.63 | 0 |
contig2538 | TCH4 | Encodes a cell wall-modifying enzyme | AT5g57560 | 3.72 | 8.85E-13 |
contig2536 | TCH4 | Encodes a cell wall-modifying enzyme | AT5g57560 | 3.22 | 1.27E-13 |
contig4524 | TCH4 | Encodes a cell wall-modifying enzyme | AT5g57560 | 5.53 | 0 |
contig9042 | RRTF1 | Member of the ERF (ethylene response factor) of ERF/AP2 transcription factor family | AT4g34410 | 37.97 | 0 |
contig8299 | RRTF1 | Member of the ERF (ethylene response factor) of ERF/AP2 transcription factor family | AT4g34410 | 4.85 | 1.39E-13 |
contig8860 | Member of the DREB subfamily A-5 of ERF/AP2 transcription factor family | AT1g19210 | 9.53 | 0 | |
contig23571 | Member of the DREB subfamily A-5 of ERF/AP2 transcription factor family | AT1g19210 | 7.29 | 0 | |
contig24042 | Member of the DREB subfamily A-5 of ERF/AP2 transcription factor family | AT1g19210 | 6.35 | 0 | |
contig13134 | Member of the DREB subfamily A-5 of ERF/AP2 transcription factor family | AT5g51190 | 5.25 | 0 | |
contig19639 | Member of the DREB subfamily A-5 of ERF/AP2 transcription factor family | AT1g19210 | 5.01 | 0 | |
contig23741 | ERF98 | Member of the ERF (ethylene response factor) | AT3g23230 | 3.45 | 1.35E-09 |
contig5510 | ERF-5 | Member of the ERF (ethylene response factor) | AT5g47230 | 4.7 | 0 |
contig5512 | ERF-5 | Member of the ERF (ethylene response factor) | AT5g47230 | 4.47 | 0 |
contig5511 | ERF-5 | Member of the ERF (ethylene response factor) | AT5g47230 | 3.92 | 0 |
contig16446 | ERF-5 | Member of the ERF (ethylene response factor) | AT5g47230 | 3.72 | 0 |
contig22401 | ERF-5 | Member of the ERF (ethylene response factor) | AT5g47230 | 3.53 | 1.03E-10 |
contig5014 | ERF-5 | Member of the ERF (ethylene response factor) | AT5g47230 | 3.17 | 0 |
contig13018 | ERF-5 | Member of the ERF (ethylene response factor) | AT5g47230 | 2.85 | 4.47E-11 |
contig5559 | ERF-4 | Member of the ERF (ethylene response factor) | AT3g15210 | 3.05 | 0 |
contig6750 | ERF-4 | Member of the ERF (ethylene response factor) | AT3g15210 | 2.21 | 1.10E-10 |
contig8076* | GhWRKY40-like4 | Pathogen-induced transcription factor | AT1g80840 | 4.98 | 0 |
contig1646* | GhWRKY40-like3 | Pathogen-induced transcription factor | AT1g80840 | 4.29 | 0 |
contig4254* | GhWRKY40-like1 | Pathogen-induced transcription factor | AT1g80840 | 2.45 | 6.95E-13 |
contig313* | GhWRKY40-like2 | Pathogen-induced transcription factor | AT1g80840 | 2.27 | 1.60E-11 |
contig5359* | GhWRKY64-like1 | Member of WRKY Transcription Factor; Group III | AT4g23810 | 5.37 | 0 |
contig9783* | GhWRKY70-like1 | Member of WRKY Transcription Factor; Group III | AT3g56400 | 4.75 | 1.14E-13 |
contig3807* | GhWRKY70-like3 | Member of WRKY Transcription Factor; Group III | AT3g56400 | 2.26 | 5.24E-11 |
contig3808* | GhWRKY70-like4 | Member of WRKY Transcription Factor; Group III | AT3g56400 | 2.24 | 3.55E-06 |
contig4599* | GhWRKY70-like2 | Member of WRKY Transcription Factor; Group III | AT3g56400 | 2.03 | 6.31E-05 |
contig4087 | GhWRKY46-like1 | Member of WRKY Transcription Factor; Group III | AT2g46400 | 4.37 | 1.77E-12 |
contig9296 | GhWRKY46-like3 | Member of WRKY Transcription Factor; Group III | AT2g46400 | 2.88 | 8.66E-14 |
contig4086 | GhWRKY46-like2 | Member of WRKY Transcription Factor; Group III | AT2g46400 | 3.5 | 0 |
contig2606* | GhWRKY33-like1 | Member of the plant WRKY transcription factor family | AT2g38470 | 3.61 | 0 |
contig2605* | GhWRKY33-like2 | Member of the plant WRKY transcription factor family | AT2g38470 | 3.36 | 0 |
contig1952 | GhWRKY33-like3 | Member of the plant WRKY transcription factor family | AT2g38470 | 2.56 | 3.01E-14 |
contig1953* | GhWRKY33-like4 | Member of the plant WRKY transcription factor family | AT2g38470 | 2.43 | 2.46E-11 |
contig4409 | GhWRKY22-like1 | member of WRKY Transcription Factor; Group II-e | AT4g01250 | 2.56 | 1.57E-11 |
contig565 | STZ | Related to Cys2/His2-type zinc-finger proteins | AT3g63380 | 5.4 | 0 |
contig6454 | STZ | Related to Cys2/His2-type zinc-finger proteins | AT1g27730 | 5.22 | 0 |
contig561 | STZ | Related to Cys2/His2-type zinc-finger proteins | AT1g27730 | 5.07 | 0 |
contig3187 | STZ | RING-H2 protein induced after exposure to chitin | AT1g27730 | 3.64 | 0 |
contig1541* | ATL2 | RING-H2 protein induced after exposure to chitin | AT3g16720 | 3.77 | 0 |
contig1540* | ATL2 | RING-H2 protein induced after exposure to chitin | AT3g16720 | 3.71 | 0 |
contig3187 | STZ | Related to Cys2/His2-type zinc-finger proteins found in higher plants | AT1g27730 | 3.64 | 0 |
contig567 | STZ | Related to Cys2/His2-type zinc-finger proteins found in higher plants | AT1g27730 | 3.63 | 5.97E-12 |
contig563 | STZ | Related to Cys2/His2-type zinc-finger proteins found in higher plants | AT1g27730 | 3.26 | 0 |
contig566 | STZ | Related to Cys2/His2-type zinc-finger proteins found in higher plants | AT5g57560 | 3.2 | 5.90E-05 |
contig569 | STZ | Related to Cys2/His2-type zinc-finger proteins found in higher plants | AT1g27730 | 2.41 | 9.60E-12 |
contig562 | STZ | Related to Cys2/His2-type zinc-finger proteins found in higher plants | AT1g27730 | 3.38 | 0 |
contig5663 | Related to Cys2/His2-type zinc-finger proteins found in higher plants | AT1g27730 | 3.63 | 0 | |
contig564 | ATSZF2 | Domain Zinc finger, C3H-type | AT2g40140 | 2.95 | 4.46E-08 |
contig722* | ATSZF2 | Domain Zinc finger, C3H-type | AT2g40140 | 3.54 | 0 |
contig729* | ATSZF2 | Zinc finger, C3H-type | AT2g40140 | 2.95 | 0 |
contig719* | ATSZF2 | Zinc finger, C3H-type | AT2g40140 | 2.79 | 0 |
contig717* | ATSZF2 | Zinc finger, C3H-type | AT2g40140 | 2.59 | 2.08E-13 |
contig720 | ATSZF1 | Salt-inducible zinc finger 1 (SZF1) | AT3g55980 | 3.19 | 1.78E-08 |
contig728 | ATSZF1 | Salt-inducible zinc finger 1 (SZF1) | AT3g55980 | 2.38 | 0.01 |
contig5654 | BRH1 | Encodes a novel ring finger protein | AT3g61460 | 3.61 | 0 |
contig22866 | ATMYB73 | Member of the R2R3 factor gene family | AT3g16720 | 3.77 | 0 |
contig19903 | ATMYB73 | Member of the R2R3 factor gene family | AT4g37260 | 3.24 | 1.10E-09 |
contig5383 | ATMYB73 | Member of the R2R3 factor gene family | AT4g37260 | 2.78 | 0 |
contig11235 | ATMYB73 | Member of the R2R3 factor gene family | AT4g37260 | 2.73 | 1.10E-08 |
contig3507 | GRAS | GRAS family transcription factor | AT3g46600 | 2.73 | 0 |
contig2875 | ANAC002 | Belongs to a large family of putative transcriptional activators with NAC domain | AT1g01720 | 3.04 | 0 |
contig718 | ANAC002 | Belongs to a large family of putative transcriptional activators with NAC domain | AT1g01720 | 2.82 | 0 |
contig725 | ANAC002 | Belongs to a large family of putative transcriptional activators with NAC domain | AT1g01720 | 2.05 | 1.37E-09 |
contig10852 | ATL6 | Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6) | AT3g05200 | 2.27 | 1.63E-10 |
contig7248 | RHL41 | Encodes a zinc finger protein | AT5g59820 | 2.66 | 5.29E-06 |
contig1779 | ATHSFA2 | Member of Heat Stress Transcription Factor (Hsf) family | AT2g26150 | −3.29 | 0 |
contig18462* | BETA | Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm | AT5g14740 | 2.69 | 0 |
contig4843 | Encodes an ABA- and drought-induced RING-DUF1117 gene | AT5g59550 | 2.09 | 1.56E-07 | |
contig17118 | AOS | Member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase | AT5g42650 | 4.5 | 2.74E-09 |
contig3758 | ACS | Encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase | AT4g11280 | 3.48 | 0 |
contig12553* | ACO | Encodes 1-aminocyclopropane-1-carboxylate oxidase | AT1g05010 | 3.1 | 0 |
contig1208* | ACO | Encodes 1-aminocyclopropane-1-carboxylate oxidase | AT1g05010 | 2.16 | 1.48E-10 |
contig1206* | ACO | Encodes 1-aminocyclopropane-1-carboxylate oxidase | AT1g05010 | 2.09 | 7.20E-10 |
contig1960 | LOX | PLAT/LH2 domain-containing lipoxygenase family protein | AT1g72520 | 3.73 | 0 |
contig9217 | CYP707A3 | Encodes a protein with ABA 8′-hydroxylase activity | AT5g45340 | 3.19 | 0 |
contig4960* | JAZ1 | JAZ1 is a nuclear-localized protein involved in jasmonate signaling | AT1g19180 | 2.26 | 5.01E-11 |
contig4959* | JAZ1 | JAZ1 is a nuclear-localized protein involved in jasmonate signaling | AT1g19180 | 2.19 | 2.02E-09 |
contig15546 | JAZ7 | Jasmonate-zim-domain protein 7 (JAZ7) | AT2g34600 | 2.03 | 0 |
contig5978 | ATCHITIV | Encodes an EP3 chitinase | AT3g54420 | 3.08 | 1.53E-14 |
contig21823 | ATCHITIV | Encodes an EP3 chitinase | AT3g54420 | 2.57 | 2.26E-10 |
contig6127 | AtCAF1a | Encodes one of the homologs of the yeast CCR4-associated factor 1 | AT3g44260 | 2.94 | 0 |
contig1389 | AT-SYR1 | Encodes a syntaxin localized at the plasma membrane | AT3g11820 | 2.82 | 5.38E-12 |
contig1388 | AT-SYR1 | Encodes a syntaxin localized at the plasma membrane | AT3g11820 | 2.41 | 2.02E-12 |
contig5585 | ATHSPRO2 | Ortholog of sugar beet HS1 PRO-1 2 (HSPRO2) | AT2g40000 | 2.69 | 0 |
contig3792 | ATHSPRO2 | Ortholog of sugar beet HS1 PRO-1 2 (HSPRO2) | AT2g40000 | 2.16 | 6.93E-05 |
contig2278 | Encodes an ABA- and drought-induced RING-DUF1117 gene | AT5g59550 | 2.61 | 1.53E-14 | |
contig4842 | Encodes an ABA- and drought-induced RING-DUF1117 gene | AT5g59550 | 2.41 | 8.61E-06 | |
contig4022 | ATNHL10 | Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) | AT2g38470 | 2.56 | 8.82E-06 |
contig4024 | ATNHL10 | Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) | AT2g35980 | 2.26 | 1.06E-09 |
contig22620 | Hs1pro-1 protein | AT3g55840 | 2.53 | 1.76E-09 | |
contig3055 | (AT)SRC2 | Unknown protein | AT1g09070 | 2.38 | 6.49E-12 |
contig6505 | ARM repeat superfamily protein | AT4g27280 | 4.04 | 0 | |
contig17616* | PUB23 | Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase | AT2g35930 | 4.21 | 4.10E-12 |
contig2098 | ATPUB29 | E3 ubiquitin ligase activity | AT3g18710 | 3.95 | 0 |
contig6504 | ATCMPG1 | Ubiquitin-protein ligase activity | AT1g66160 | 3.9 | 0 |
contig8776 | Ubiquitin-protein ligase activity | AT5g37490 | 2.31 | 2.24E-07 | |
GO:0016265 - Death | |||||
contig10876 | RLK1 | Encodes a receptor-like protein kinase | AT5g60900 | 2.56 | 5.07E-05 |
contig15035 | RLK1 | Encodes a receptor-like protein kinase | AT5g60900 | 2.28 | 8.92E-06 |
contig6958 | RIPK | Encodes a receptor-like cytoplasmic kinase | AT2g05940 | 2.13 | 1.14E-09 |
contig5615 | EVR | Encodes a putative leucine rich repeat transmembrane protein kinase | AT2g31880 | 2.21 | 7.45E-09 |
contig12017 | CCR3 | CRINKLY4 related 3 (CCR3); kinase activity | AT3g55950 | 2.24 | 3.33E-07 |
contig7179 | NA | Protein kinase family protein with leucine-rich repeat domain | AT5g25930 | 2.02 | 5.33E-09 |
contig10122 | ATPP2-A1 | Encodes a phloem lectin | AT4g19840 | 2.79 | 0 |
contig7573 | GRX480 | Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state | AT1g28480 | 2.35 | 2.97E-12 |
contig8179 | ATRBOHD | NADPH/respiratory burst oxidase protein D (RbohD) | AT5g47910 | 2.64 | 1.53E-14 |
contig9014 | ATRBOHD | NADPH/respiratory burst oxidase protein D (RbohD) | AT5g47910 | 2.48 | 7.49E-11 |
contig9015 | ATRBOHD | NADPH/respiratory burst oxidase protein D (RbohD) | AT5g47910 | 2.65 | 1.57E-09 |
contig4745 | ATMC1 | Metacaspase AtMCP1b | AT1g02170 | 2.24 | 1.02E-09 |
contig5579 | ATGATL1 | The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase | AT1g19300 | 2.66 | 0 |
contig2607 | ATWRKY33 | Member of the plant WRKY transcription factor family | AT2g38470 | 3.14 | 1.00E-13 |
contig2076 | ATEBP | Encodes a member of the ERF (ethylene response factor) | AT3g16770 | 2.23 | 5.79E-11 |
contig14400 | ANAC083 | Encodes a NAC domain transcription factor | AT5g13180 | 2.26 | 1.93E-07 |
contig12668 | JMT | Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase | AT1g19640 | 3.4 | 0 |
contig13244 | AtLEA5 | Encodes AtLEA5, also known as Senescence-associated gene 21 (SAG21). Has a role on oxidative stress tolerance | AT4g02380 | 2.34 | 7.06E-12 |
contig4041 | AtLEA5 | Encodes AtLEA5, also known as Senescence-associated gene 21 (SAG21). Has a role on oxidative stress tolerance | AT4g02380 | 2.76 | 0 |
contig4042 | AtLEA5 | Encodes AtLEA5, also known as Senescence-associated gene 21 (SAG21). Has a role on oxidative stress tolerance | AT4g02380 | 2.37 | 2.58E-09 |
contig4022 | ATNHL10 | Encodes a protein non-race specific disease resistance gene (NDR1) | AT2g35980 | 2.56 | 8.82E-06 |
contig4024 | ATNHL10 | Encodes a protein non-race specific disease resistance gene (NDR1) | AT2g35980 | 2.26 | 1.06E-09 |
contig3055 | (AT)SRC2 | SRC2 specifically binds the peptide PIEPPPHH | AT1g09070 | 2.38 | 6.49E-12 |
contig1388 | AT-SYR1 | Encodes a syntaxin | AT3g11820 | 2.41 | 2.02E-12 |
contig1389 | AT-SYR1 | Encodes a syntaxin | AT3g11820 | 2.82 | 5.38E-12 |
contig21823 | ATCHITIV | Encodes an EP3 chitinase | AT3g54420 | 2.57 | 2.26E-10 |
contig5978 | ATCHITIV | Encodes an EP3 chitinase | AT3g54420 | 3.08 | 1.53E-14 |