Skip to main content

Table 2 Genes differentially transcribed in ‘Zaoyihong’ leaves in response to mock-inoculation (B) and A. tenuissima inoculation (D)

From: RNA-Seq derived identification of differential transcription in the chrysanthemum leaf following inoculation with Alternaria tenuissima

GeneID

Function

Annotation

B-

D-

B-Relative

D-Relative

   

RPKM

RPKM

level of gene expression

level of gene expression

 

Transcription factors

     

Unigene6575_All

 

MYB family transcription factor

16.44

78.47

38.91 ± 4.27

128.30 ± 8.75

Unigene16113_All

 

MYB family transcription factor

4.16

15.43

2.12 ± 0.25

5.53 ± 0.11

CL9570

 

MYB family transcription factor

40.79

16.56

20.65 ± 0.61

9.22 ± 0.34

Unigene29332_All

 

Ethylene-responsive transcription factor

19.13

95.07

52.19 ± 2.11

134.46 ± 9.55

Unigene17395_All

 

Ethylene-responsive transcription factor

8.06

29.67

1.93 ± 0.16

8.52 ± 0.21

Unigene271_All

 

Ethylene-responsive transcription factor

29.14

105.39

18.36 ± 1.63

59.55 ± 2.61

Unigene7360_All

 

WRKY family transcription factor

140.72

1061.25

91.14 ± 4.36

766.75 ± 123.16

Unigene12209_All

 

WRKY family transcription factor

45.59

291.26

35.82 ± 2.34

253.35 ± 8.63

Unigene37863_All

 

WRKY family transcription factor

100.02

506.41

56.99 ± 3.64

305.58 ± 11.64

Unigene37669_All

 

WRKY family transcription factor

251.80

974.58

159.19 ± 15.47

722.79 ± 37.85

Unigene23051_All

 

NAC transcription factor

18.01

101.86

14.91 ± 1.26

78.02 ± 3.25

Unigene4479_All

 

NAC transcription factor

14.71

43.49

14.59 ± 1.37

39.91 ± 1.47

CL14412

 

NAC transcription factor

33.29

99.47

1.81 ± 0.11

22.31 ± 2.11

Unigene41060_All

 

GRAS family transcription factor

17.43

94.16

49.72 ± 5.56

166.22 ± 8.29

Unigene20543_All

 

GRAS family transcription factor

72.90

271.62

52.64 ± 4.53

169.66 ± 7.79

Unigene11471_All

 

GRAS family transcription factor

15.68

38.84

63.39 ± 4.99

285.75 ± 22.55

 

JA signaling pathway

     

Unigene11800_All

 

JAZ gene

20.57

97.20

56.24 ± 2.76

254.24 ± 17.19

Unigene3689_All

 

MYC2 transcription factor

71.44

27.57

34.38 ± 2.78

14.16 ± 0.74

CL10952

 

Vegetative storage protein

65.82

133.03

114.24 ± 4.80

224.06 ± 16.05

 

SA signaling pathway

     

Unigene23699_All

 

NPR1 gene

20.05

45.55

147.74 ± 18.02

187.23 ± 7.05

Unigene52251_All

 

TGA transcription factor

7.64

49.89

3.88 ± 0.44

21.00 ± 0.79

 

Cell wall modification

     

CL11209

 

Polygalacturonase-inhibiting protein

1.03

30.96

1.01 ± 0.07

15.04 ± 1.08

Unigene9160_All

 

Polyphenol oxidase

87.35

485.99

99.99 ± 26.96

499.20 ± 24.85

  1. All these genes were significantly up- or down-regulated (P value < 0.05). The RPKM data were obtained from the RNA-Seq analysis and the relative level of transcript abundance from the qPCR analysis.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us