From: Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)
SNP category | RR seq | RAD seq | RNA seq | Other | Total* |
---|---|---|---|---|---|
Total candidate SNPs | 73,800 | 54,197 | 156,979 | 4,714 | 286,021 |
Low quality clusters** | 9,795 | 8,192 | 21,609 | 219 | 39,429 |
Monomorphic | 9,010 | 18,157 | 83,368 | 811 | 110,910 |
High quality polymorphic SNPs | 54,995 | 27,848 | 52,002 | 3,684 | 135,682 |
Mendelian error | 1,292 | 756 | 1,595 | 66 | 3,649 |
Final total filtered SNPs | 53,703 | 27,092 | 50,407 | 3,618 | 132,033 |