From: SNPs selection using support vector regression and genetic algorithms in GWAS
Group | SNP selection with raw p-values | # SNPs | Linear** | RBF** | PUK** |
---|---|---|---|---|---|
1 | < 10-9 | 2a | 0.49(0.14) | 0.48(0.14) | 0.54(0.14) |
2 | < 10-8 | 2a | 0.49(0.14) | 0.48(0.14) | 0.54(0.14) |
3 | < 10-7 | 2a | 0.49(0.14) | 0.48(0.14) | 0.54(0.14) |
4 | < 10-6 | 2a | 0.49(0.14) | 0.48(0.14) | 0.54(0.14) |
5 | < 10-5 | 3b | 0.49(0.14) | 0.55(0.14) | 0.56(0.13) |
6 | < 10-4 | 3b | 0.49(0.14) | 0.55(0.14) | 0.56(0.13) |
7 | < 10-3 | 6c | 0.55(0.14) | 0.58(0.14) | 0.71(0.16) |
8 | < 10-2 | 14 | 0.67(0.13) | 0.67(0.13) | 0.73(0.12) |
9 | < 10-1 | 119 | 0.49(0.14) | 0.55(0.14) | 0.56(0.13) |
10 | < 0.20 | 220 | 0.36(0.18) | 0.69(0.09) | 0.73(0.09) |
11 | < 0.30 | 307 | 0.50(0.09) | 0.65(0.07) | 0.68(0.06) |
12 | < 0.40 | 401 | 0.60(0.11) | 0.69(0.09) | 0.72(0.09) |
13 | < 0.50 | 511 | 0.63(0.10) | 0.67(0.09) | 0.67(0.10) |
14 | < 0.60 | 598 | 0.58(0.10) | 0.62(0.10) | 0.63(0.11) |
15 | < 0.70 | 702 | 0.54(0.12) | 0.58(0.12) | 0.57(0.12) |
16 | < 0.80 | 803 | 0.49(0.14) | 0.50(0.14) | 0.49(0.14) |
17 | < 0.90 | 914 | 0.39(0.16) | 0.40(0.17) | 0.39(0.17) |
18 | - | 7d | 0.64(0.13) | 0.97(0.03) | 0.96(0.04) |