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Table 4 Results of Gavin PPI data and biomedical literature PPI data.

From: Integrating experimental and literature protein-protein interaction data for protein complex prediction

 

COACH

CMC

ClusterONE

COAN

 

F

σF

F

σF

F

σF

F

σF

Gavin dataset

0.406

-

0.321

-

0.418

-

0.404

-

Gavin + random I

0.402

0.003

0.311

0.009

0.408

0.012

0.402

0.004

Gavin + random II

0.398

0.005

0.298

0.005

0.389

0.013

0.401

0.005

Gavin + random III

0.395

0.005

0.283

0.012

0.366

0.013

0.393

0.008

Gavin + Aimed

0.42

-

0.359

-

0.429

-

0.428

-

Gavin + BioInfer

0.414

-

0.329

-

0.415

-

0.413

-

Gavin + IEPA

0.406

-

0.342

-

0.427

-

0.409

-

Gavin +HPRD50

0.417

-

0.32

-

0.423

-

0.409

-

Gavin + LLL

0.41

-

0.337

-

0.411

-

0.419

-

  1. Gavin + random I, Gavin + random II, and Gavin + random III show the results of randomly adding 1000, 2000 and 3000 interactions to the Gavin dataset, respectively. The highest F-score of each approach is shown in bold.
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BMC Genomics

ISSN: 1471-2164

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