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Table 4 Ten-fold cross validation and testing accuracy for enzyme identification and enzyme classification.

From: Application of a hierarchical enzyme classification method reveals the role of gut microbiome in human metabolism

 

Enzyme Identification (EC L0)

Enzyme Classification (EC L1)

Classifiers

Ten-fold

Accuracy*

Testing

Accuracy

Ten-fold

Accuracy*

Testing

Accuracy

DS

66.39

66.39

39.12

39.31

NBC

92.60

92.46

96.11

95.88

KNN

94.38

94.38

97.80

97.56

SVM

95.69

94.86

98.34

98.39

RFC

98.42

94.60

97.50

97.28

  1. *Ten-fold cross validation accuracy. At EC L0 and EC L1 using ML classifiers, Decision Stump (DS), Naïve Bayes Classifier (NBC), K-Nearest Neighbor (KNN), Support Vector Machine (SVM), and Random Forest Classifier (RFC). At EC L0, train and test sets contain 154,592 and 38,648 sequences respectively, whereas EC L1 contain train and test sets of 50,139 and 12,535, respectively.
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BMC Genomics

ISSN: 1471-2164

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