Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs)

Table 1 Chicago QTL browser data sets.

Dataset	Notes	Number of eQTLs/total	Num. Genes (Regions)	Total GTEx Markers
Mangravite 2012 [20]	LCLs; candidate genes	42,550/49,937	2,064 (2,030)	385,836
Montgomery 2010A [21]	LCLs; RNA-seq; exons	12,691/13,965	2,755 (2,155)	1,389,595
Montgomery 2010B [21]	LCLs; RNA-seq; transcripts	3,881/4,748	934 (706)	493,074
Schadt 2007 [22]	Liver	2,558/2,694	1,523 (857)	862,416
Stranger 2007 [23]	LCLs	12,751/15,067	1,309 (961)	289,863
Veyrieras 2008 [24]	LCLs	13,730/15,939	1,437 (1016)	296,696
Zeller 2010 [25]	Monocytes	36,371/39,923	5,532 (3,931)	1,398,426

For each Dataset with primary reference: Notes on the sample in which eQTLs were measured; the Number of eQTLs below their significant threshold and which are also present in the GTEx candidate panel (out of the total number of QTLs passing the threshold in the source data set); the Number of Genes (and intergenic Regions, each of which was analysed as if a gene) which contained at least one eQTL present in both data sets; and, the Total GTEx Markers present in those genes, whether they are eQTLs in the corresponding data set or not.

ISSN: 1471-2164