Table 5 Nucleotide composition of simple sequence repeats in the R. solanacearum megaplasmid

Genome composition

   A

347472

16.58

301622

16.62

45850

16.34

   C

699983

33.41

613428

33.81

86555

30.83

   G

700536

33.44

610348

33.64

90188

32.13

   T

346518

16.54

288441

15.90

58077

20.69

Mononucleotide SSRs ≥ 6 bp

   Total

722

350

372

   A

172

23.82

83

23.71

89

23.93

   C

169

23.41

94

26.86

75

20.16

   G

197

27.29

130

37.14

67

18.01

   T

184

25.49

43

12.29

141

37.90

   G+C

366

50.69

224

64.00

142

38.17

   A+T

356

49.31

126

36.00

230

61.83

Dinucleotide SSRs ≥ 6 bp

   Total

7708

6727

981

   AC/CA

190

2.47

143

2.13

47

4.79

   AG/GA

135

1.75

71

1.06

64

6.52

   AT/TA

38

0.49

15

0.22

23

2.35

   CG/GC

7127

92.46

6297

93.61

830

84.61

   CT/TC

129

1.67

82

1.22

47

4.79

   GT/TG

166

2.15

119

1.77

47

4.79