Table 3 Number of full-length, fragmented, and solo LTRs in the completely sequenced chromosome 10 of O. sativa (Nipponbare) genome
LTR Retrotransposon Families | Full-length | Solo-LTRs | Fragmented retroelements (Fragmented solo-LTRs) | Subtotal |
|---|---|---|---|---|
Osr1 | 4 | 1 | 15 (4) | 20 |
Osr2 | 0 | 0 | 0 | 0 |
Osr3 | 0 | 0 | 0 | 0 |
Osr4 | 0 | 0 | 0 | 0 |
Osr5 | 0 | 0 | 1(1) | 1 |
Osr6 | 0 | 0 | 1(0) | 1 |
Osr7 | 0 | 0 | 0 | 0 |
Osr8 | 3 | 10 | 40 (36) | 53 |
Osr9a | 0 | 0 | 0 | 0 |
Osr10 | 2 | 5 | 9 (9) | 16 |
Osr11a | 0 | 0 | 0 | 0 |
Osr12 | 6 | 2 | 2 (2) | 10 |
Osr13 | 7 | 5 | 16 (14) | 28 |
Osr14 | 3 | 8 | 4 (4) | 15 |
Osr15 | 3 | 0 | 6 (6) | 9 |
Osr16 | 1 | 0 | 0 | 1 |
Osr17 | 3 | 1 | 2 (1) | 6 |
Osr18a | 0 | 0 | 0 | 0 |
Osr19 | 1 | 0 | 0 | 1 |
Osr20 | 0 | 0 | 0 | 0 |
Osr21a | 0 | 0 | 0 | 0 |
Osr22 | 1 | 0 | 0 | 1 |
Osr23 | 0 | 0 | 1 (0) | 1 |
Subtotal for Copia | 34 | 32 | 97 (77) | 163 |
Osr24 | 0 | 0 | 0 | 0 |
Osr25 | 19 | 1 | 25 (19) | 45 |
Osr26 | 1 | 0 | 36 (18) | 37 |
Osr27 | 9 | 12 | 8 (8) | 29 |
Osr28 | 0 | 0 | 1 (1) | 1 |
Osr29 | 1 | 3 | 19 (15) | 23 |
Osr30 | 1 | 7 | 63 (59) | 71 |
Osr31 | 3 | 0 | 0 | 3 |
Osr32 | 0 | 4 | 25 (24) | 29 |
Osr33 | 2 | 7 | 138 (115) | 147 |
Osr34 | 9 | 11 | 71 (60) | 91 |
Osr35 | 2 | 0 | 0 | 2 |
Osr36 | 1 | 0 | 0 | 1 |
Osr37 | 6 | 4 | 18 (14) | 28 |
Osr38a | 0 | 0 | 0 | 0 |
Osr39a | 0 | 0 | 0 | 0 |
Osr40 | 4 | 5 | 24 (23) | 33 |
Osr41 | 6 | 0 | 15 (8) | 21 |
Osr42 | 0 | 0 | 1 (1) | 1 |
Osr43 | 0 | 0 | 1 (0) | 1 |
Osr44 | 0 | 0 | 0 | 0 |
Subtotal for Gypsy | 64 | 54 | 445 (365) | 563 |
Overall | 98 | 86 | 542 (442) | 726 |