Bioinformatic mapping of AlkB homology domains in viruses

BMC Genomics

Table 2 Strict joint assertions distances for NJ and ML trees

ML\NJ^a	MT	AlkB	HEL	RdRp	log L^b	BS (%)^c	ID (%)^d
MT	-	0.488	0.161	0.053	-14068	85	27
AlkB	0.263	-	0.524	0.456	-4016	35	38
HEL	0.058	0.317	-	0.117	-10425	87	28
RdRp	0.062	0.258	0.092	-	-14543	91	37

^a Strict joint assertions (SJA) values based on quartets as computed by Component for ML trees (lower left) and NJ trees (upper right). SJA is defined as resolved and different quartets divided by all resolved quartets.
^b The likelihood value from Tree-Puzzle.
^c Average bootstrap value for all branches in each NJ tree.
^d Average sequence identity for all pairs of sequences in each alignment.

ISSN: 1471-2164