Table 2 SNP discovery results
| Â | shotgun- based | genotyping-based (only wild 1*) | genotyping-based (wild 1, 2, 3*) | total (only wild 1*) | total (wild 1, 2, 3*) |
|---|---|---|---|---|---|
BN specific | 36 (7.4 %) | 9 (2.5 %) | 7 (1.9 %) | 45 (5.3 %) | 43 (5.0 %) |
wild specific | 77 (15.9 %) | 12 (3.4 %) | 30 (8.0 %) | 89 (10.6 %) | 107 (12.4 %) |
in 35 strains, not in wild | 0 | 204 (57.0 %) | 156 (41.5 %) | 204 (24.2 %) | 156 (18.1 %) |
in 35 strains, shared with wild | 372 (76.7 %) | 133 (37.1 %) | 183 (48.7 %) | 505 (59.9 %) | 555 (64.5 %) |
total | 485 (100 %) | 358 (100 %) | 376 (100 %) | 843 (100 %) | 861 (100 %) |