From: Identification of functional SNPs in the 5-prime flanking sequences of human genes
Gene Name /Ensembl ENSG | TF name (distance from start site) | SNP rs ID | Allele 1 | Allele 2 |
---|---|---|---|---|
Beta-2 adrenergic receptor ENSG00000164272 | Nkx(-4257) | rs2082382 | ttcagtg | ttcggtg |
Gklf(-4216) | rs2082395 | aagtgagaag | aagtgagaaa | |
c-ETS(-1049) | rs1432622 | gatcct | gatctt | |
P2y purinoceptor 5 (p2y5) ENSG00000139679 | SAP-1(-149) | rs2233571 | agcggaaat | agtggaaat |
Anion exchange protein 2 ENSG00000164889 | Yin-Yang(-3480) | rs2069453 | gccatg | gccgtg |
c-ETS(-2988) | rs2069451 | tttccc | tgtccc | |
SPI-1(-2988) | rs2069451 | gggaaa | gggaca | |
SPI-B(-2990) | rs2069451 | atgggaa | atgggac | |
c-MYB_1(-1536) | rs2069442 | gggagttg | gggacttg | |
Nkx(-1537) | rs2069442 | tcaagtc | tcaactc | |
SP1(-1440) | rs2069441 | agggctggga | agagctggga | |
C-c chemokine receptor type 1 ENSG00000163823 | SPI-B(-117) | rs3181080 | acaagaa | actagaa |
SOX17(-118) | rs3181080 | tttcttgtc | tttctagtc | |
Frizzled 6 precursor (frizzled-6) ENSG00000164930 | deltaEF1(-629) | rs3758096 | caccta | aaccta |
Proteinase activated receptor 3 ENSG00000164220 | c-ETS(-32) | rs2069647 | catcct | cctcct |
deltaEF1(-31) | rs2069647 | ctcctt | atcctt | |
Chemokine (C-X-C) receptor 6 ENSG00000163819 | c-MYB_1(-469) | rs2234352 | tacagatg | tatagatg |
Thing1-E47(-469) | rs2234352 | catctgtaaa | catctataaa | |
5-hydroxytryptamine 1a receptor ENSG00000178394 | ARNT(-2174) | rs968554 | caagtg | caactg |
c-MYB_1(-2174) | rs968554 | tccagttg | tccacttg | |
deltaEF1(-2174) | rs968554 | cacttg | cagttg | |
n-MYC(-2174) | rs968554 | cacttg | cagttg | |
USF(-2174) | rs968554 | caagtgg | caactgg | |
USF(-2175) | rs968554 | cacttgg | cagttgg | |
ARNT(-2174) | rs968554 | cacttg | cagttg | |
deltaEF1(-2174) | rs968554 | caactg | caagtg | |
n-MYC(-2174) | rs968554 | caagtg | caactg | |
Muscarinic acetylcholine receptor M1 ENSG00000168539 | MZF_1-4(-148) | rs509813 | tggggg | tggcgg |
MZF_5-13(-149) | rs509813 | gtggggggag | gtggcgggag | |
MZF_1-4(-147) | rs509813 | gggggg | ggcggg | |
SP1(-147) | rs509813 | ggggggagga | ggcgggagga | |
Dopamine receptor D1a ENSG00000184845 | FREAC-4(-4311) | rs267412 | gtaaaccc | gtaagccc |
TCF11MafG(-4446) | rs267413 | actgac | acagac | |
Follicle stimulating hormone receptor ENSG00000170820 | HFH-3(-81) | rs2882225 | ggatgctttttt | ggatgctgtttt |
HFH-2(-82) | rs2882225 | gatgcttttttt | gatgctgttttt | |
c-ETS(-80) | rs2349718 | cttctt | cttttt | |
Gklf(-87) | rs2349718 | aaaaaaaaag | aaaaaaaaaa | |
SPI-1(-80) | rs2349718 | aagaag | aaaaag | |
5-hydroxytryptamine 2c receptor ENSG00000147246 | HFH-1(-1736) | rs3795182 | ccatgtttata | ccatatttata |
MEF2(-1734) | rs3795182 | atatttataa | atgtttataa | |
FREAC-4(-1734) | rs3795182 | ataaacat | ataaatat | |
c-ETS(-271) | rs3813928 | tatcct | taccct | |
MZF_1-4(-273) | rs3813928 | tgagga | tgaggg | |
SPI-B(-273) | rs3813928 | tgaggat | tgagggt | |
Bradykinin receptor 2 ENSG00000168398 | Ahr-ARNT(-535) | rs945032 | tgggtg | tgggta |
MZF_1-4(-80) | rs1800508 | tgggca | tgagca | |
AP2alpha(-79) | rs1800508 | gcccaggag | gctcaggag | |
TCF11-MafG(-61) | rs1799722 | aatgat | agtgat | |
Adenosine A3 receptor ENSG00000121933 | AP2alpha(-4276) | rs1538251 | gccctctgg | tccctctgg |
Alpha-1a adrenergic receptor ENSG00000120907 | c-ETS(-4898) | rs562843 | cttctt | cttatt |
SPI-1(-4898) | rs562843 | aagaag | aataag | |
Nkx(-4900) | rs562843 | ataagtt | agaagtt | |
C-c chemokine receptor type 2 ENSG00000121807 | TCF11MafG(-1823) | rs3092964 | catgcc | catacc |
Ahr-ARNT(-1825) | rs3092964 | tgcatg | tgcata | |
TCF11MafG(-1823) | rs3749462 | catgcc | catacc | |
Ahr-ARNT(-1825) | rs3749462 | tgcatg | tgcata | |
Putative chemokine receptor ENSG00000119594 | SPI-B(-86) | rs3825163 | tcaggaa | ccaggaa |
FREAC-4(-80) | rs3825163 | gtaaccat | ataaccat | |
TCF11-MafG(-81) | rs3825163 | gataac | ggtaac | |
Nkx(-161) | rs2256572 | ttatttg | ctatttg | |
S8(-163) | rs2256572 | tatta | tacta | |
TCF11MafG(-232) | rs590447 | gctgac | gccgac | |
deltaEF1(-230) | rs590447 | cagctt | cggctt | |
Calcitonin receptor ENSG00000004948 | TCF11MafG(-511) | rs2528521 | agtgac | agtggc |
Lectomedin-3 ENSG00000150471 | AP2alpha(-770) | rs905963 | gccccgagc | accccgagc |
SPI-1(-763) | rs905963 | gcgaac | gcgagc | |
c-ETS(-365) | rs1505666 | cctcct | ccttct | |
SPI-1(-366) | rs1505666 | gagaag | gaggag | |
MZF_1-4(-367) | rs1505666 | agagga | agagaa | |
Glucagon-like P2 ENSG00000065325 | SPI-B(-881) | rs1402655 | tgagaaa | tgataaa |
G protein-coupled receptor ENSG00000102865 | Yin-Yang(-118) | rs2240047 | gccatg | gccctg |
TCF11MafG(-118) | rs2240047 | catggc | cagggc | |
Gfi(-1575) | rs724615 | aaaatcacag | aaaatgacag |