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Table 1 Frequency of detected SNPs with PSNPscore ≥ 0.95 in the contigs derived from all 12 genotypes used to obtain ESTs

From: Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs

Number of clones in the contig

Number of contigs

SNPs

Cumulated length of the contigs

SNPs/nucleotide site1

Cumulated length of the contigs excluding non redundant sites1

SNPs/redundant nucleotide site2

2

2911

2,158

2,554,730

1:1,184

1,536,400

1:712

3

1356

1,814

1,337,593

1:737

987,177

1:544

4

715

1,196

769,584

1:643

620,190

1:518

5

441

915

504,813

1:552

419,567

1:458

6

284

695

345,924

1:498

293,883

1:422

7

159

375

202,507

1:540

169,052

1:451

8

119

358

150,187

1:419

130,071

1:363

9

81

267

101,714

1:381

91,286

1:342

≥10

393

1,532

553,392

1:361

507,528

1:331

Total

6459

9,310

6,521,041

1:700

4,755,154

1:511

  1. 1 Sites of the contigs where only one sequence has been determined.
  2. 2 Sites of the contigs where more than one sequence has been determined.
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BMC Genomics

ISSN: 1471-2164

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