Halobacterium species NRC-1 main (NRC1) and minichromomes (pNRC100 and pNRC200) | ||||||||
---|---|---|---|---|---|---|---|---|
Chromosome | Sample | Reads per unique bin | Reads per repeat bin | Percent chromosomal reads/genome | Percent unique chromosomal reads/genome | Percent repeat chromosomal reads/genome | Percent unique reads/chromosomal reads | Percent repeat reads/chromosomal reads |
NRC1 2.01 Mb 68% GC 1.4% repeats | Control | 1.91 | 22.38 | 44% | 38% | 6% | 86% | 14% |
 | Average Unamplified Replicates | 1.92 | 22.18 | 44% | 38% | 6% | 86% | 14% |
 | GenomiPhi | 0.83 | 30.92 | 25% | 16% | 9% | 66% | 35% |
 | Repli-G | 0.55 | 36.23 | 21% | 11% | 10% | 52% | 48% |
 | PEP-PCR | 0.69 | 28.67 | 22% | 14% | 8% | 63% | 37% |
 | DOP-PCR | 0.38 | 28.07 | 15% | 8% | 8% | 49% | 51% |
pNRC100 191Kb 57.9% GC 79.4% repeats | Control | 6.42 | 13.84 | 24% | 3% | 21% | 11% | 89% |
 | Average Unamplified Replicates | 6.51 | 13.77 | 23% | 3% | 21% | 11% | 89% |
 | GenomiPhi | 9.47 | 18.64 | 32% | 4% | 28% | 12% | 88% |
 | Repli-G | 9.81 | 19.68 | 34% | 4% | 30% | 12% | 88% |
 | PEP-PCR | 11.09 | 20.51 | 35% | 4% | 31% | 13% | 88% |
 | DOP-PCR | 2.59 | 20.19 | 32% | 1% | 31% | 3% | 97% |
pNRC200 365 Kb 59.2% GC 45.0% repeats | Control | 3.78 | 14.97 | 32% | 8% | 25% | 24% | 76% |
 | Average Unamplified Replicates | 3.85 | 14.89 | 32% | 8% | 24% | 24% | 76% |
 | GenomiPhi | 4.86 | 20.19 | 43% | 10% | 33% | 23% | 77% |
 | Repli-G | 4.54 | 21.92 | 45% | 9% | 36% | 20% | 80% |
 | PEP-PCR | 3.76 | 21.40 | 43% | 8% | 35% | 18% | 82% |
 | DOP-PCR | 7.65 | 22.92 | 53% | 15% | 38% | 29% | 71% |
Campylobacter jejuni single chromosome | ||||||||
Chromosome | Sample | Reads per unique bin | Reads per repeat bin | Percent chromosomal reads/genome | Percent unique chromosomal reads/genome | Percent repeat chromosomal reads/genome | Percent unique reads/chromosomal reads | Percent repeat reads/chromosomal reads |
C. jejuni 1.64 Mb 31% GC 2.71% repeat | Control | 5.90 | 12.94 | N/A | 94% | 6% | N/A | N/A |
 | Average Unamplified Replicates | 5.90 | 12.97 |  | 94% | 6% |  |  |
 | GenomiPhi | 5.96 | 10.81 |  | 95% | 5% |  |  |
 | Repli-G | 5.87 | 13.85 |  | 94% | 6% |  |  |
 | PEP-PCR | 5.35 | 32.42 |  | 86% | 15% |  |  |
 | DOP-PCR | 6.12 | 4.91 |  | 98% | 2% |  |  |