Genomic organization and evolution of the ULBP genes in cattle

Larson, Joshua H; Marron, Brandy M; Beever, Jonathan E; Roe, Bruce A; Lewin, Harris A

doi:10.1186/1471-2164-7-227

BMC Genomics

Table 3 Genomic annotation of the major ULBP gene cluster

From: Genomic organization and evolution of the ULBP genes in cattle

Locus	Status	Orient.	Exon	Exon position (bp)	Size (bp)	Stop codon
ULBP7	pseudogene	-	2	8,262-8,018	245	Yes
			3	7,790-7,515	276	No
			4	6,890-6,759	132	No
			5	5,578-5,454	125	Yes
ULBP8	pseudogene	-	2	24,180-23,979	202	Yes
ULBP9	gene	+	1	28,719–28,813	95	No
			2	37,552–37,815	264	No
			3	38,054–38,329	276	No
			4	38,934–39,066	133	Yes
			5	39,881–40,391	511	Yes
ULBP10	pseudogene	-	2	51,618-51,357	262	No
			3	51,115-50,835	281	Yes
ULBP11	gene	+	1	55,298-55,409	112	No
			2	64,155-64,418	264	No
			3	64,656-64,931	276	No
			4	65,535-65,667	133	No
			5	66,814-67,324	511	Yes
ULBP12	pseudogene	-	2	78,583-78,389	195	No
			3	78,079-77,816	264	No
ULBP13	gene	+	1	82,210–82,345	136	No
			2	91,064–91,327	264	No
			3	91,564–91,839	276	No
			4	92,443–92,578	136	No
			5	93,722–94,227	506	Yes
ULBP14	pseudogene	-	2	105,503–105,240	264	No
			3	105,005-104,733	273	Yes
ULBP15	gene	+	1	109,168–109,278	111	No
			2	117,844–118,107	264	No
			3	118,345–118,620	276	No
			4	119,224–119,356	133	No
			5	120,500–121,003	504	Yes
ULBP16	pseudogene	-	2	141,435-141,160	276	No
			3	140,931-140,666	266	No
ULBP17	gene	+	1	160,588–160,721	134	No
			2	178,284–178,547	264	No
			3	178,782–179,057	276	No
			4	179,685–179,817	133	No
			5	181,195–181,591	397	Yes
ULBP18	pseudogene	-	2	194,201-194,003	199	No
			3	192,969-192,694	276	Yes
ULBP19	pseudogene	-	2	205,757-205,495	263	No
			3	205,259–204,985	275	Yes
			4	204,053-203,923	131	Yes
ULBP20	pseudogene	-	3	215,364-215,116	249	Yes
ULBP21	gene	-	1	230,458-230,371	88	No
			2	227,628-227,590	39	No
			3	226,923-226,660	264	No
			4	226,284-226,009	276	No
			5	224,903-224,771	133	Yes
			6	223,621-223,508	114	Yes
ULBP22	pseudogene	-	2	247,327-247,005	263	Yes
			3	246,855-246,580	276	No
			4	245,961-245,830	132	No
			5	244,644-244,532	113	No
ULBP23	pseudogene	-	2	264,695-264,431	264	Yes
ULBP24	pseudogene	+	1	270,030–270,163	134	No
			2	277,941–278,215	275	Yes
			3	278,442–278,717	276	No
			4	279,606–279,738	133	Yes
			5	280,568–281,054	487	Yes
ULBP25	pseudogene	-	1	300,310-300,223	88	No
			2	296,899-296,861	39	No
			3	296,194-295,931	264	No
			4	295,553-295,279	275	Yes
			5	294,125-294,015	111	Yes
			6	292,846-292,384	463	Yes
ULBP26	pseudogene	-	1	322,695-322,562	134	No
			2	316,336-316,098	239	Yes
			3	315,865-315,589	277	Yes
			4	314,950-314,815	136	No
			5	314,113-313,670	444	Yes
ULBP27	gene	+	1	336,705–336,840	134	No
			2	345,589–345,852	264	No
			3	346,091–346,366	276	No
			4	346,971–347,103	133	Yes
			5	347,918–348,404	487	Yes
ULBP28	pseudogene	-	2	359,653-359,390	264	No
			3	359,148-358,883	266	No
			4	358,026-357,887	140	Yes
ULBP2	gene	+	1	378,496–378,629	134	No
			2	386,342–386,605	264	No
			3	386,840–387,115	276	No
			4	387,763–387,895	133	No
			5	389,276–389,762	487	Yes
ULBP29	pseudogene	-	2	402,249-402,066	184	No
			3	401,018-400,743	276	Yes
ULBP30	pseudogene	-	2	413,811-413,548	264	No
			3	413,313-413,038	276	No
			4	412,112–411,980	133	Yes
ULBP31	pseudogene	-	3	423,435-423,164	272	Yes

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ISSN: 1471-2164

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