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Table 1 Distribution of STAT1 binding sites detected within the ENCODE region.

From: Proximal genomic localization of STAT1 binding and regulated transcriptional activity

Chr

Position

Distance

Gene symbol

Description

RefSeq id

Figure

13

111381278

-6172

ATP11A*

ATPase I type 11A

BC024154

3A

 

111475471

+88021 (+1162)

  

BC024154 (AK024264)

3B

13

111614528

+43712 (+9528)

MCF2L*

MCF.2-like

NM_024979 (BC020208)

3C

 

111635357

+64541 (+30357)

   

3D

13

111659869

+48237 (-6750)

F7 (MCF2L*)

Coagulation factor VII precursor

NM_000131 (AB116075)

3E

 

111710547

+2441

F7

 

NM_000131

3F

16

150458

-5539

HBM

Hemoglobin mu chain (Hypothetical protein)

NM_001003938

3G

16

176687

+6352

HBQ1

Hemoglobin theta-1 chain

NM_005331

3H

16

457805

+42185 (-3412)

Rab11-FIP3*

Rab11 family-interacting protein 3

NM_014700 (BC009036)

3I

19

59084649

+7247

PRKCG

Protein kinase C, gamma

NM_002739

3J

19

59114793

+4154

-

Ensembl predicted

-

3K

 

59115225

+3722

 

gene

  
 

59116521

+2426

 

ENSG00000188966

  
 

59116611

+2336

    
 

59117115

+1832

    
 

59117619

+1328

    
 

59119491

-544

    

21

32879469

-1229

TCP10L

t-complex 10 (mouse)-like

NM_144659

3L

21

33523051

+376

IFNaR2

Interferon (alpha, beta and omega) receptor 2

NM_000874

3M

5

131902803

-160

IRF1

Interferon regulatory

NM_002198

3N

 

131907429

-4786

 

factor-1

  
 

131908640

-5997

    
  1. The genomic positions at which STAT1 binds in response to IFN-γ were determined by taking the average position of each peak of STAT1 binding with a score greater than 0.4, as described in Figure 2. Distances from the start sites of nearest genes are given in base-pairs (according to NCBIv34 annotation). References to Figure 3, showing graphical illustrations of STAT1 binding intensities, are given for each STAT1 binding site.
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BMC Genomics

ISSN: 1471-2164

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