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Table 4 Summary statistics for SNPs and indels in introns of 12 lines of tomato.

From: Diversity in conserved genes in tomato

  Loci with SNPs Number of SNPs % Loci with SNPs SNPs/locus Bases/SNP1 Loci with indels2 Number of indels % Loci with indels Indels/locus Bases/indel1
Total 302 1487 31.2 4.9 641 153 282 16 1.8 3378
S. lycopersicum 243 980 25.1 4.0 973 139 248 14 1.8 3841
   Breeding lines3 162 579 16.7 3.6 1647 122 206 13 1.7 4624
US Fresh Market 53 168 5.5 3.2 5675 106 158 11 1.5 6028
Processing 121 402 12.5 3.3 2372 118 193 12 1.6 4935
   var cerasiformae 161 586 16.6 3.6 1627 98 154 10 1.6 6185
S. pimpinellifolium 275 1121 28.4 4.1 851 98 152 10 1.6 6266
  1. 1Adjusted for % polymorphic loci and average contig length of 985 bp
  2. 2Thirteeen loci have indels and no SNPs
  3. 3Includes fresh market, processing and heirloom