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Table 4 Several REG groups were identified from Arabidopsis and rice octamer analysis

From: Identification of plant promoter constituents by analysis of local distribution of short sequences

Arabidopsis

Rice

*GGCCCA*

 

   AGGCCCAA#

AGGCCCAA#

   AGGCCCAC#

AGGCCCAC#

   AGGCCCAG#

AGGCCCAG#

   AGGCCCAT#

AGGCCCAT#

   CGGCCCAA#

CGGCCCAA#

   CGGCCCAT#

CGGCCCAC

   GGGCCCAA#

CGGCCCAG

   GGGCCCAG#

CGGCCCAT#

   GGGCCCAT#

GGGCCCAA#

   TGGCCCAA

GGGCCCAC

   TGGCCCAG#

GGGCCCAG#

   TGGCCCAT#

GGGCCCAT#

 

TGGCCCAC

 

TGGCCCAG#

 

TGGCCCAT#

**ACGT**, *ACGT***

 

   ACACGTCA

ACACGTGG#

   ACACGTGA

CACGTCAC#

   ACACGTGG#

CACGTCTC

   CACGTCAC#

CACGTGGC#

   CACGTCAG

CACGTGGG#

   CACGTCAT

CACGTGTC#

   CACGTCTC#

 

   CACGTGAC

 

   CACGTGCG

 

   CACGTGGA

 

   CACGTGGC#

 

   CACGTGGG#

 

   CACGTGGT

 

   CACGTGTA

 

   CACGTGTC#

 

   CACGTGTG

 

   CACGTGTT

 

   CCACGTAG

 

   CCACGTCA

 

   CCACGTCG

 

   GACGTCGT

 
  1. REGs found in both Arabidopsis and rice are indicated with a sharp (hash) symbol. An asterisk indicates any base and is used to restrict the position of the motif in the octamer sequence.