Skip to main content

Table 5 Proteins that are specific for methanogens (Methanoarchaeota)

From: Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis

(a) Proteins specific to Methanoarchaeota

MMP0001

[NP_987121]

COG4014

MMP1346

[NP_988466]

MtrX

COG4002

MMP00215

[NP_987141]

COG4079

MMP1555

[NP_988675]

MCR_B

CDD25889

MMP0143

[NP_987263]

COG4069

MMP1556

[NP_988676]

MCR_D

CDD3015

MMP0154

[NP_987274]

COG4070

MMP1557

[NP_988677]

MCR_C

CDD15906

MMP03115

[NP_987431]

COG4048

MMP1558

[NP_988678]

MCR_G

CDD29638

MMP0312

[NP_987432]

COG4050

MMP1559

[NP_988679]

MCR_A

CDD8362

MMP0337

[NP_987457]

COG4029

MMP1560

[NP_988680]

MtrE

CDD9765

MMP0421

[NP_987541]

COG4052

MMP1561

[NP_988681]

MtrD

CDD9766

MMP05635

[NP_987683]

COG4090

MMP1562

[NP_988682]

MtrC

CDD17461

MMP0642

[NP_987762]

COG4020

MMP1563

[NP_988683]

MtrB

CDD23666

MMP0656

[NP_987776]

COG4051

MMP15644

[NP_988684]

MtrA

COG4063

MMP0665

[NP_987785]

COG4066

MMP1566

[NP_988686]

MtrG

CDD9769

MMP06985

[NP_987818]

COG4033

MMP1593

[NP_988713]

COG1571

 

MMP07015

[NP_987821]

COG4081

MMP1644

[NP_988764]

COG4022

 

MMP1223

[NP_988343]

COG4065

MMP1704

[NP_988824]

COG4008

 

MMP13095

[NP_988429]

COG4073

    

(b) Proteins specific to all methanogen and A. fulgidus

MMP0372

[NP_987492]

MTD CDD2518

MMP0962

[NP_988082]

COG4855

 

MMP04001

[NP_987520]

COG1707

MMP09765

[NP_988096]

COG1810

 

MMP04995

[NP_987619]

ArsR CDD28947

MMP09845

[NP_988104]

CO_dh

CDD3060

MMP06072

[NP_987727]

NrpR COG1693

MMP14995

[NP_988619]

HTH

COG4800

MMP09615

[NP_988081]

CDD15263

MMP15673

[NP_988687]

MtrH

CDD25859

(c) Proteins specific to some methanogen and A. fulgidus

Mbur_0042

[YP_564815]

 

Mbur_0546

[YP_565273]

  

Mbur_0348

[YP_565093]

 

Mbur_0652

[YP_565373]

  

Mbur_0350

[YP_565095]

 

Mbur_0992

[YP_565682]

  

Mbur_0545

[YP_565272]

 

Mbur_1754

[YP_566394]

CDD48145

 

Mbur_0387

[YP_565131]

CDD28974

Mbur_1911

[YP_566543]

  
  1. The protein ID number starting with Mbur represents query protein from the genome of M. burtonii. "=" means paralogous genes.
  2. Note 1. A homolog to MMP0400 is found in Solibacter usitatus Ellin6076 and Rubrobacter xylanophilus DSM 9941;
  3. Note 2. A homolog to MMP0607 is found in Dehalococcoides sp. CBDB1 and D. ethenogenes 195;
  4. Note 3. A homolog to MMP1567 is found in 2 Desulfitobacterium hafniense strains (Firmicutes), and the CmuB protein from 3 species belonging to Rhizobiales of α-proteobacteria also show great similarity with MtrH;
  5. Note 4. A homolog to MMP1564 is also found in Dechloromonas aromatica RCB;
  6. Note 5. These 10 proteins are absent in the genome of Methanosphaera stadtmanae DSM 3091.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us