Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution

Griffin, Darren K; Robertson, Lindsay B; Tempest, Helen G; Vignal, Alain; Fillon, Valérie; Crooijmans, Richard PMA; Groenen, Martien AM; Deryusheva, Svetlana; Gaginskaya, Elena; Carré, Wilfrid; Waddington, David; Talbot, Richard; Völker, Martin; Masabanda, Julio S; Burt, Dave W

doi:10.1186/1471-2164-9-168

BMC Genomics

Table 1 Chicken BAC clones and chromosome paints mapped successfully to both chicken (GGA) and turkey (MGA) microchromosomes. Up to and including GGA28, only GGA22 has neither a BAC nor a paint successfully hybridizing to both species; for GGA16 only one BAC could be hybridised to both species. The remainder all have at least 2 BACs and/or a paint tagging the chromosome.

From: Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution

Chicken chromosome number (GGA)	Turkey orthologue number (MGA)	BAC clone name	Chicken genetic marker	Chromosome paint successful on both species?
9	11	BW009J23	ROS0078	Yes
9	11	BW027D19	ADL0191	Yes
9	11	BW010E13	MCW0017	Yes
9	11	BW089K16	ABR0018	Yes
9	11	BW014A21	MCW0134	Yes
10	12	BW009C07	LEI0333	Yes
10	12	BW008K20	MCW0228	Yes
10	12	BW018B17	COM0101	Yes
10	12	BW046J07	MCW0194	Yes
10	12	BW015I08	ADL0272	Yes
10	12	BW092I14	ADL0231	Yes
10	12	BW018I03	MCW0035	Yes
10	12	BW085M07	ADL0120	Yes
10	12	BW014B17	ADL0106	Yes
10	12	BW008G10	MCW0132	Yes
10	12	BW006H24	IGF1R	Yes
10	12	BW089E07	GNRHR	Yes
10	12	BW026A13	RPL4	Yes
10	12	BW055K19	LEI0112	Yes
10	12	BW035L19	MCW0003	Yes
10	12	BW012O09	ABR0012	Yes
10	12	BW098C19	ADL0112	Yes
11	13	BW035F15	LEI0143	Yes
11	13	BW012F03	LEI00110	Yes
11	13	BW010A05	ADL0232	Yes
11	13	BW029L10	MCW0097	Yes
11	13	BW087P13	ADL0123	Yes
11	13	BW003B03	ADL0287	Yes
11	13	BW084D24	ADL0041	Yes
11	13	BW054E23	ADL0308	Yes
11	13	BW053F11	ABR0037	Yes
12	14	BW017B16	ADL0372	Yes
12	14	BW033L02	ADL0240	Yes
12	14	BW047D10	LEI0099	Yes
12	14	BW067B16	MCW0198	Yes
12	14	BW011C21	MCW0332	Yes
13	15	BW014G12	MCW0244	Yes
13	15	BW018H02	MCW0213	Yes
13	15	BW027P20	MSX2	Yes
13	15	BW008N24	SDX1	Yes
13	15	BW025H18	CAMLG	Yes
14	16	BW019L14	CTG7070	No
14	16	BW026C02	MCW0136	No
14	16	BW043B20	MCW0296	No
14	16	BW026J16	GCT0908	No
14	16	BW053L23	ADL0200	No
14	16	BW014I20	LEI0098B	No
14	16	BW002J02	MCW0123	No
14	16	BW060O01	GCT0903	No
14	16	BW068N21	ROS0005	No
15	17	BW109B14	MCW0031	No
15	17	BW003B07	ADL0206	No
15	17	BW010L01	LEI0083	No
15	17	BW017C11	LEI0120	No
15	17	BW023P01	ADL0039A	No
15	17	BW107C20	MCW0231	No
15	17	BW047O08	GCT0014	No
15	17	BW030E18	MCW0080	No
15	17	BW007G01	MCW0211	No
16	18	BW065G09	MCW0371	No
17	19	BW117D07	HSP5A	No
17	19	BW040G23	ADL0149	No
17	19	BW023I07	MCW0330	No
17	19	BW013I13	MCW0151	No
17	19	BW020L20	LEI0342	No
17	19	BW032N22	ADL0202	No
18	20	BW122G20	HUJ0010	Yes
18	20	BW019B13	MCW0045	Yes
18	20	BW027I07	ROS0022	Yes
18	20	BW034F23	ADL0290	Yes
18	20	BW000O20	ADL0184	Yes
18	20	BW014H23	ROS0027	Yes
18	20	BW001D02	MCW0219	Yes
19	21	BW086B08	LEI0330	Yes
19	21	BW055M22	SCW0024	Yes
20	22	BW020P15	GCT0039	Yes
20	22	BW022L03	ADL0193	Yes
20	22	BW084E10	ADL0034	Yes
20	22	BW010A11	FZFsts1	Yes
21	23	No BACS		Yes
22	24	No BACS		No
23	25	BW025H08	ADL0262	No
23	25	BW096F24	LEI0339	No
23	25	BW010D11	ADL0289	No
23	25	BW029E23	LEI0102	No
23	25	BW028L18	LEI0090	No
24	26	BW013J20	ROS0113a	Yes
24	26	BW008L04	ROS0123	Yes
24	26	BW020E08	APOA1sts	Yes
24	26	BW032F12	LEI0069	Yes
25	27	No BACS		Yes
26	28	BW056B11	MCW0262	Yes
26	28	BW005G11	MCW0286	Yes
26	28	BW077M23	MCW0209	Yes
26	28	BW028I01	MCW0069	Yes
26	28	BW019A06	ABR0006	Yes
27	29	BW029K01	CTG2535	Yes
27	29	BW028K09	MCW0233	Yes
27	29	BW009E08	MCW0146	Yes
27	29	BW008C15	MCW0328	Yes
27	29	BW003A13	GCT0022	Yes
28	30	BW036G05	LEI0135	No
28	30	BW017C23	ROS0266	No
28	30	BW024J22	ABR0341	No
28	30	BW005E17	GCT0904	No
28	30	BW029E08	LEI0067A	No
29–38	31–39	No BACS		No

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ISSN: 1471-2164

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